genome.fa.s3093.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003093.1 Hibiscus syriacus cultivar Beakdansim tig00006452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128598

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905--1000	49	2.0	48	88	10	142	33	19	10	36	1.86
3195--3235	16	2.7	16	92	7	68	17	21	12	48	1.79
11472--11514	18	2.4	18	96	0	77	30	13	13	41	1.84
13427--13545	24	5.0	24	79	4	132	39	17	15	27	1.90
13432--13545	48	2.4	48	88	2	158	39	17	14	28	1.89
30101--30134	18	1.9	18	88	5	52	26	2	2	67	1.19
33155--33228	30	2.5	30	95	0	130	16	36	27	20	1.93
34702--34749	21	2.3	20	79	10	60	22	27	16	33	1.96
34740--34777	20	1.9	20	88	0	58	36	21	18	23	1.95
35633--35687	25	2.2	24	93	3	92	20	18	20	41	1.90
38197--38240	20	2.3	19	84	4	52	38	20	20	20	1.94
38224--38321	19	5.7	18	67	24	68	46	18	22	12	1.82
38224--38317	33	2.8	33	93	0	161	46	18	22	12	1.82
38317--38354	19	2.0	19	89	0	58	15	15	23	44	1.85
38332--38411	33	2.7	28	74	22	83	8	25	20	46	1.79
38353--38419	33	2.0	33	91	0	107	10	25	17	46	1.80
38505--38542	14	2.7	14	84	15	60	42	18	0	39	1.50
39911--39986	21	3.6	21	66	7	55	23	23	28	23	1.99
40469--40506	20	1.9	20	94	0	67	7	15	26	50	1.72
40495--40553	14	3.9	14	74	20	55	10	18	22	49	1.77
40475--40569	33	2.8	33	90	1	136	10	18	23	47	1.80
40549--40599	21	2.2	25	80	20	74	15	13	19	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40556--40611	21	2.7	21	97	0	103	14	16	23	46	1.83
40681--40965	93	3.1	94	91	1	457	48	18	11	21	1.79
42553--42615	20	3.2	20	80	8	74	46	15	23	14	1.83
43199--43283	20	4.2	20	72	19	68	23	22	21	32	1.98
43217--43271	20	2.7	20	88	2	74	21	21	18	38	1.94
49907--49981	3	24.7	3	83	2	69	44	0	0	56	0.99
51084--51130	23	2.0	23	84	8	60	31	4	4	59	1.36
51091--51138	22	2.2	22	81	7	53	29	4	4	62	1.32
62594--62655	10	6.3	11	80	17	66	85	0	14	0	0.60
62969--63013	16	2.8	16	83	10	56	28	8	6	55	1.56
63784--64610	83	10.0	83	96	0	1447	27	13	22	37	1.91
65317--65825	113	4.5	112	89	4	754	34	14	19	30	1.92
65344--65835	229	2.2	225	91	2	788	36	14	19	30	1.91
65736--65913	93	1.9	93	90	3	288	31	17	16	34	1.93
66183--66254	3	23.7	3	85	2	63	44	0	0	55	0.99
67381--67427	23	2.0	23	84	8	60	31	4	4	59	1.36
67388--67435	22	2.2	22	81	7	53	29	4	4	62	1.32
70079--70152	10	7.6	10	69	22	59	58	18	10	12	1.63
70083--70147	16	4.1	16	91	0	103	56	20	12	10	1.65
70504--70558	10	5.1	10	77	16	56	58	23	9	9	1.58
70517--70572	14	4.3	14	78	17	66	55	26	10	7	1.60
70507--70571	24	2.7	24	90	0	103	56	26	9	7	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71218--71247	14	2.1	14	93	0	51	23	30	6	40	1.80
72369--72446	34	2.3	34	95	0	138	26	14	7	51	1.69
73249--73347	36	2.8	37	86	11	152	38	11	16	34	1.84
73352--73389	13	2.9	13	100	0	76	60	0	15	23	1.35
74100--74422	162	2.0	159	96	3	603	36	17	15	30	1.91
74529--74601	36	2.0	36	100	0	146	39	16	13	30	1.87
74965--75048	34	2.4	34	82	2	114	30	13	16	39	1.87
79996--80039	20	2.1	21	83	4	54	20	13	22	43	1.87
80632--80713	22	3.7	22	95	0	137	21	17	25	35	1.95
83827--83890	25	2.7	24	83	11	78	51	0	1	46	1.10
85538--85589	3	17.0	3	88	4	50	57	1	0	40	1.10
85733--86013	124	2.3	119	82	7	336	24	17	15	42	1.88
85938--86543	113	5.4	113	85	5	692	29	18	14	37	1.90
86445--86608	73	2.2	73	81	2	186	32	15	17	35	1.91
88852--88904	8	6.6	8	79	16	56	0	15	1	83	0.74
88852--88904	17	3.3	15	80	19	63	0	15	1	83	0.74
88856--88906	23	2.3	22	93	3	84	0	15	1	82	0.76
88856--88906	15	3.4	15	84	7	68	0	15	1	82	0.76
96256--96284	15	1.9	15	100	0	58	48	6	20	24	1.74
99569--99633	30	2.1	30	82	5	76	63	1	6	29	1.28
99576--99644	30	2.2	30	82	5	75	60	1	7	30	1.32
100122--100185	25	2.7	24	83	11	78	51	0	1	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101842--101911	3	23.0	3	85	2	86	58	0	0	41	0.98
102446--102483	2	19.0	2	94	0	67	47	0	2	50	1.15
103366--103399	9	3.8	9	88	0	50	23	0	2	73	0.97
103776--103855	29	3.0	28	70	21	71	43	2	0	53	1.14
103797--103832	18	2.0	18	88	0	54	44	0	0	55	0.99
103842--103891	18	2.8	18	75	0	55	40	0	4	56	1.18
103868--103925	25	2.2	25	84	9	71	58	0	3	37	1.15
108094--108193	41	2.4	41	96	0	182	32	23	11	34	1.89
109927--109974	23	2.1	23	88	0	69	20	12	16	50	1.78
111209--111237	12	2.3	13	94	5	51	10	17	51	20	1.74
111253--111326	29	2.5	30	93	2	132	17	35	14	32	1.91
114611--114666	2	28.0	2	100	0	112	50	0	0	50	1.00

Tables:   1

The End!