genome.fa.s3095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003095.1 Hibiscus syriacus cultivar Beakdansim tig00006459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59555

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783--1210	113	3.8	109	86	7	494	37	14	17	30	1.90
1054--1098	24	1.9	23	82	13	56	48	6	26	17	1.72
842--1320	113	4.3	113	83	9	476	38	14	17	29	1.89
1564--1609	3	15.7	3	86	4	67	36	0	0	63	0.95
1571--1608	20	1.9	20	94	0	67	36	0	0	63	0.95
1577--1620	20	2.2	20	87	0	61	47	0	0	52	1.00
1565--1620	26	2.2	26	83	0	67	44	0	0	55	0.99
3045--3087	22	2.0	22	81	9	52	41	2	0	55	1.12
4585--4708	51	2.4	50	84	5	151	17	32	24	25	1.97
8536--8564	9	3.2	9	100	0	58	10	34	20	34	1.87
8906--8945	18	2.2	18	100	0	80	20	22	32	25	1.98
10335--10555	111	2.0	111	94	0	388	44	10	8	35	1.70
11235--11278	18	2.4	18	92	0	70	29	9	18	43	1.80
19008--19046	20	2.0	19	90	5	60	17	28	20	33	1.96
20942--21072	21	6.1	21	73	10	95	24	12	23	38	1.90
21006--21105	44	2.3	44	82	0	119	20	15	27	38	1.92
21715--21870	65	2.4	66	82	5	192	31	19	17	31	1.95
23692--23716	12	2.1	12	100	0	50	68	0	24	8	1.16
24135--24253	42	2.9	41	77	13	118	36	16	20	26	1.94
24154--24331	82	2.1	83	83	6	227	35	19	19	25	1.95
24159--24316	42	3.8	41	79	12	162	35	18	20	25	1.95
24209--24438	41	5.6	41	75	14	152	35	16	17	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24299--24502	82	2.5	82	81	10	204	34	15	16	33	1.91
24347--24502	41	3.8	39	83	8	177	32	15	17	33	1.92
24342--24502	82	2.0	82	85	4	218	34	14	17	33	1.91
25008--25270	41	6.3	42	76	11	168	25	19	20	33	1.97
25028--25327	42	7.2	41	81	4	293	27	20	19	33	1.97
25054--25327	124	2.2	126	84	5	367	26	20	20	33	1.97
27827--27944	21	5.6	21	91	0	173	41	21	36	0	1.59
28409--28647	43	5.6	43	82	3	266	31	22	15	29	1.95
31570--31696	23	5.5	23	90	0	200	37	20	19	22	1.94
36326--36619	45	6.5	45	88	0	428	39	16	18	25	1.91
36326--36617	135	2.2	135	92	1	487	40	16	18	25	1.91
42701--42741	20	2.0	21	86	13	59	41	4	7	46	1.53
43163--43230	24	2.9	24	75	12	61	51	19	7	22	1.71
43277--43316	18	2.2	18	86	8	55	52	17	2	27	1.57
43496--43537	21	2.0	21	85	0	57	30	21	28	19	1.97
46766--46929	58	2.9	56	79	8	161	48	15	3	32	1.60
46776--46928	29	5.3	29	81	4	141	47	15	3	33	1.61
48395--48449	20	2.8	20	80	5	58	36	14	20	29	1.92
54099--54124	6	4.3	6	100	0	52	46	0	19	34	1.50
57547--57603	24	2.4	24	100	0	114	24	26	7	42	1.80

Tables:   1

The End!