Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003096.1 Hibiscus syriacus cultivar Beakdansim tig00006460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56211

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8454--8533
20
4.0
20
79
9
81
26
31
25
17
1.97
11216--11270
20
2.8
20
97
0
101
21
32
25
20
1.97
12612--13719
84
13.2
85
81
4
955
23
18
24
33
1.97
12612--13720
168
6.6
168
84
2
1287
23
19
24
33
1.97
12587--13719
252
4.5
253
84
2
1332
23
18
24
33
1.97
14843--15098
95
2.7
95
87
3
352
32
18
16
33
1.93
16900--16924
12
2.1
12
100
0
50
36
24
16
24
1.94
17314--17490
46
3.9
45
89
2
250
32
23
6
37
1.81
17565--17645
40
2.0
40
85
0
108
24
24
24
25
2.00
29537--29564
13
2.2
13
100
0
56
17
0
0
82
0.68
29560--29945
44
9.0
43
81
10
375
26
17
6
49
1.71
29560--29945
86
4.5
86
81
8
403
26
17
6
49
1.71
29560--29968
42
9.5
43
81
8
406
26
17
6
49
1.71
32506--32548
3
14.3
3
100
0
86
34
0
0
65
0.93
38113--38142
15
2.0
15
100
0
60
46
0
26
26
1.53
40122--40178
10
5.5
10
82
14
71
78
1
14
5
0.99
40108--40178
20
3.5
19
84
11
79
78
5
11
4
1.05
42431--42609
76
2.4
76
84
7
217
27
20
14
37
1.92
42885--43506
136
4.6
136
85
3
769
34
16
21
27
1.95
42885--43506
271
2.3
271
87
3
871
34
16
21
27
1.95
48260--48299
21
1.9
21
89
0
62
25
40
25
10
1.86
54107--54233
44
2.9
42
78
13
139
27
7
6
58
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54139--54546
42
9.5
43
79
9
372
26
17
6
50
1.70
54139--54523
44
9.0
42
79
12
322
26
17
6
50
1.70
54183--54523
129
2.7
126
81
8
395
25
18
6
49
1.70
54139--54523
171
2.2
170
80
10
426
26
17
6
50
1.70

Tables:   1

The End!