genome.fa.s3097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003097.1 Hibiscus syriacus cultivar Beakdansim tig00006465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95018

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394--436	18	2.4	18	96	0	77	27	6	18	46	1.75
1025--1075	21	2.4	21	83	0	66	37	23	13	25	1.92
1020--1096	21	3.8	20	75	10	57	38	24	11	24	1.89
4890--4924	2	18.0	2	94	5	63	48	0	0	51	1.00
18636--18675	17	2.3	17	86	4	53	45	0	0	55	0.99
18989--19046	2	29.0	2	100	0	116	50	0	0	50	1.00
19585--19634	19	2.5	20	87	3	66	50	22	14	14	1.77
19604--19832	20	11.2	20	78	15	204	39	24	19	16	1.91
19668--19825	60	2.6	60	92	4	255	36	26	20	16	1.93
19928--20002	6	12.5	6	100	0	150	33	50	16	0	1.45
20498--20548	6	8.5	6	100	0	102	0	15	50	33	1.44
20644--21049	20	20.2	20	76	13	365	15	19	23	41	1.89
20651--20948	40	7.4	40	88	8	410	16	19	24	39	1.91
20961--21010	18	2.7	18	87	6	64	12	18	20	50	1.78
21622--21717	20	4.7	21	75	5	79	40	15	23	19	1.90
21632--21698	20	3.3	20	77	4	80	41	16	23	17	1.89
21706--21800	20	4.7	20	77	2	82	35	24	16	23	1.95
21629--21717	41	2.2	41	97	0	169	41	15	24	17	1.89
21988--22031	22	2.0	22	95	0	79	20	45	15	18	1.85
22295--22332	20	1.9	20	88	0	58	13	15	21	50	1.78
23651--23695	18	2.5	18	85	0	63	26	42	15	15	1.87
24201--24294	19	5.5	19	67	29	77	45	22	20	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24215--24272	14	3.9	14	73	22	55	48	24	17	10	1.78
24201--24289	32	2.7	33	91	6	146	47	22	19	11	1.81
24306--24363	14	3.9	14	77	16	62	8	18	25	46	1.78
24301--24421	32	3.5	32	78	14	134	11	21	23	42	1.85
24320--24437	20	6.4	19	77	11	95	13	20	24	41	1.88
26426--26479	14	3.5	14	77	22	63	48	20	20	11	1.80
26407--26484	33	2.4	33	91	0	120	42	21	23	12	1.87
26503--26580	20	3.9	20	94	0	129	16	23	21	38	1.93
27640--27693	24	2.2	24	90	0	81	24	16	20	38	1.92
30182--30312	19	7.7	19	64	23	85	43	19	22	14	1.87
30182--30308	33	3.8	33	86	4	193	43	19	22	14	1.88
30183--30315	66	2.0	66	95	0	239	42	19	21	16	1.89
30471--30507	14	2.6	14	91	0	65	45	24	0	29	1.53
31866--31932	21	3.2	21	68	4	55	19	20	35	23	1.95
31866--31988	42	2.9	42	83	4	124	23	17	35	22	1.95
33976--34036	20	3.1	19	79	9	68	44	18	24	13	1.85
34001--34097	33	2.9	33	89	1	140	40	24	23	11	1.88
34098--34178	19	4.5	19	74	16	73	11	16	24	48	1.78
34716--34793	41	1.9	41	89	0	120	23	15	21	39	1.91
34697--34790	20	4.7	20	80	2	89	24	17	24	34	1.96
34716--34811	41	2.3	41	82	3	113	21	18	21	37	1.94
35414--35464	12	3.9	12	73	26	50	13	21	27	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35418--35473	28	2.0	28	96	0	103	19	17	26	35	1.94
35458--35543	41	2.1	41	82	6	104	22	17	22	38	1.93
35479--35543	19	3.3	19	67	12	58	18	18	21	41	1.90
35480--35543	22	3.0	22	68	14	55	18	17	21	42	1.89
35618--35678	6	10.7	6	98	1	101	29	52	18	0	1.45
36283--36334	20	2.6	20	90	0	86	44	21	23	11	1.84
36341--36414	22	3.5	22	70	10	82	39	25	16	18	1.91
43518--43558	21	1.9	22	95	5	75	75	2	4	17	1.08
44843--44872	15	2.0	15	93	0	51	30	0	0	70	0.88
50351--50402	26	2.1	24	82	7	59	50	21	13	15	1.78
49991--51322	665	2.0	666	96	0	2477	40	17	10	30	1.83
57026--57077	27	1.9	27	88	0	77	25	7	42	25	1.81
61600--61651	27	1.9	27	88	0	77	25	7	42	25	1.81
75439--75491	23	2.3	23	93	0	97	20	28	26	24	1.99
75615--75644	2	15.0	2	100	0	60	50	0	0	50	1.00
75615--75678	10	6.0	11	77	14	55	42	0	12	45	1.42
75945--75969	2	12.5	2	100	0	50	0	0	48	52	1.00
76693--76764	21	3.5	21	87	7	103	29	22	22	26	1.99
77584--77677	30	3.1	29	84	4	107	34	9	14	41	1.79
77911--77955	14	3.1	14	80	3	54	42	0	0	57	0.98
79149--79197	20	2.5	20	86	6	73	34	28	10	26	1.89
80196--80243	21	2.2	22	81	7	55	64	0	6	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80524--80585	25	2.5	25	97	0	115	62	3	6	27	1.35

Tables:   1

The End!