genome.fa.s3098.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003098.1 Hibiscus syriacus cultivar Beakdansim tig00006467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85880

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934--973	14	2.8	14	85	14	55	82	2	15	0	0.77
924--975	27	1.9	27	84	7	70	78	5	15	0	0.92
940--973	18	1.9	18	88	5	52	82	2	14	0	0.79
999--1045	5	9.4	5	78	17	53	74	6	19	0	1.03
999--1045	11	4.7	10	82	12	53	74	6	19	0	1.03
6111--6153	19	2.2	20	87	4	61	48	6	9	34	1.62
8528--8608	35	2.3	36	85	6	103	32	4	33	29	1.79
8552--8628	36	2.2	35	95	2	136	27	5	37	29	1.78
8916--8958	20	2.2	20	88	12	63	53	4	9	32	1.53
9659--9697	20	1.9	21	84	5	53	48	7	17	25	1.74
17801--17837	17	2.2	17	100	0	74	21	18	16	43	1.88
26266--26299	17	2.0	17	94	0	59	35	0	32	32	1.58
26565--26611	14	3.4	14	85	8	60	2	14	2	80	0.89
26816--26848	15	2.1	16	94	5	59	60	0	27	12	1.32
33077--33173	13	8.0	12	72	22	62	28	3	37	30	1.73
33062--33174	36	3.2	36	92	1	174	27	3	36	32	1.74
33514--33564	19	2.6	20	87	3	68	45	5	15	33	1.71
36650--36693	15	2.9	15	80	16	54	2	15	2	79	0.93
37103--37167	33	2.0	33	81	6	78	29	1	35	33	1.67
37140--37252	36	3.2	36	87	1	147	28	3	34	33	1.74
37153--37252	13	8.3	12	71	19	66	30	3	35	32	1.73
37592--37642	19	2.6	20	87	3	68	45	5	15	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40722--40766	13	3.4	13	80	17	56	2	13	2	82	0.86
41205--41316	35	3.2	36	89	3	165	26	3	36	33	1.74
41656--41706	19	2.6	20	87	3	68	45	5	15	33	1.71
45370--45466	13	8.0	12	72	22	62	28	3	37	30	1.73
45355--45467	36	3.2	36	92	1	174	27	3	36	32	1.74
45807--45857	19	2.6	20	87	3	68	45	5	15	33	1.71
55751--55845	36	2.6	36	89	0	145	29	35	4	30	1.77
55789--55858	13	5.7	12	80	16	65	31	37	2	28	1.72
56026--56072	14	3.1	15	75	12	51	72	6	19	2	1.17
69809--69847	20	1.9	21	84	5	53	15	23	38	23	1.92
72169--72203	17	2.1	17	100	0	70	31	22	5	40	1.78
79728--79897	90	1.9	88	89	4	261	21	26	23	28	1.99
80645--80691	25	2.0	23	83	8	58	68	12	10	8	1.40
82334--82497	90	1.9	87	88	3	247	21	25	20	31	1.98
84817--84859	20	2.2	19	95	4	77	4	13	13	67	1.38

Tables:   1

The End!