Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003099.1 Hibiscus syriacus cultivar Beakdansim tig00006472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86817

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3921--3969
19
2.5
19
80
16
55
57
2
12
28
1.46
9697--9741
19
2.3
19
84
3
54
28
8
11
51
1.68
15990--16041
17
3.1
17
86
2
70
38
13
5
42
1.68
18875--18910
17
2.1
17
90
10
56
41
11
5
41
1.64
24026--24078
17
3.1
17
77
0
61
39
9
15
35
1.79
35241--35288
21
2.4
20
86
6
62
20
14
2
62
1.42
48482--48526
1
45.0
1
81
0
54
0
0
8
91
0.43
48483--48526
9
4.8
9
88
5
70
0
0
9
90
0.44
48465--48526
28
2.2
28
88
2
88
3
1
11
83
0.82
48482--48527
19
2.4
20
92
7
78
0
0
10
89
0.50
53539--53581
19
2.3
19
87
0
59
0
11
11
76
1.02
53538--53585
11
4.6
11
85
15
66
0
10
12
77
1.00
53538--53574
19
1.9
19
94
0
65
0
8
13
78
0.96
58020--58072
23
2.3
23
80
3
63
47
1
0
50
1.12
58073--58103
2
15.5
2
100
0
62
48
0
0
51
1.00
58031--58080
23
2.2
23
82
7
57
42
2
0
56
1.11
58382--58445
29
2.2
30
86
8
87
45
10
0
43
1.39
63210--63264
24
2.3
25
81
6
60
29
21
16
32
1.95
66329--66368
20
2.0
20
85
9
55
25
10
7
57
1.57
67905--67955
19
2.8
17
82
11
57
76
3
17
1
1.03
67914--67973
26
2.4
25
81
10
68
73
5
16
5
1.19
80780--80861
42
2.0
42
97
2
157
36
25
7
30
1.83

Tables:   1

The End!