genome.fa.s31.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000031.1 Hibiscus syriacus cultivar Beakdansim tig00000052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150627

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2153--2228	35	2.2	35	90	4	118	40	22	1	35	1.62
2615--2859	129	1.9	129	92	0	409	36	15	12	35	1.86
3184--3246	28	2.3	27	78	8	63	46	1	3	49	1.27
3326--3359	16	2.0	18	88	11	54	64	5	2	26	1.30
3873--3911	20	2.0	20	89	0	60	46	2	0	51	1.14
23974--24018	19	2.2	20	88	7	65	44	4	0	51	1.21
30941--30980	16	2.4	17	83	8	55	37	2	7	52	1.43
32035--32121	32	2.7	31	77	12	86	37	0	2	59	1.10
32012--32130	18	7.1	18	66	18	51	35	0	4	60	1.16
32261--32314	17	3.2	17	72	0	54	31	0	3	64	1.11
37168--37327	75	2.1	75	81	0	194	36	15	8	39	1.79
37361--37557	73	2.7	75	83	2	245	32	11	11	44	1.76
38581--38624	23	1.9	23	85	0	61	36	13	18	31	1.90
38614--38847	75	3.1	74	86	2	299	35	13	11	39	1.81
38681--39015	173	1.9	174	86	4	480	35	12	11	40	1.79
38750--38954	98	2.1	98	84	6	272	35	12	11	40	1.79
38868--39037	76	2.3	75	81	2	214	34	12	10	42	1.77
39350--39453	37	2.8	37	91	0	163	40	14	12	32	1.83
39890--39940	14	3.6	14	81	7	50	33	0	0	66	0.92
39966--40027	19	3.4	18	82	17	83	33	8	1	56	1.38
39960--40027	35	1.9	34	88	11	102	35	7	1	55	1.37
40093--40157	16	4.0	16	77	15	53	15	9	3	72	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40201--40251	24	2.1	24	82	7	59	17	7	0	74	1.05
40215--40252	8	4.8	8	81	12	51	15	2	0	81	0.80
40267--40322	30	1.9	30	82	7	71	14	19	3	62	1.46
43672--43705	15	2.3	15	100	0	68	47	20	14	17	1.83
44214--44337	54	2.3	55	88	2	180	22	32	23	21	1.98
50128--50188	23	2.9	19	81	11	59	21	36	26	16	1.94
52447--52482	18	2.0	18	100	0	72	33	0	22	44	1.53
52816--53021	76	2.7	76	87	1	272	25	30	23	20	1.98
53876--53922	18	2.7	18	90	3	69	29	10	31	27	1.90
54211--54254	19	2.3	19	88	0	61	36	31	11	20	1.88
54274--54406	40	3.3	40	82	5	162	42	23	15	18	1.88
54274--54421	40	3.7	39	79	8	156	42	23	15	18	1.88
54306--54427	20	6.1	20	72	14	108	44	22	14	18	1.86
54946--54979	14	2.4	14	85	0	50	55	23	8	11	1.63
54926--54991	34	1.9	34	87	0	96	53	22	10	13	1.71
56052--56113	17	3.8	17	70	21	51	59	19	0	20	1.38
56195--56244	25	2.0	25	96	0	91	44	22	8	26	1.80
56366--56407	20	2.1	20	86	0	57	42	16	23	16	1.88
56411--56459	20	2.5	20	72	0	53	28	20	26	24	1.99
58871--58898	3	9.3	3	100	0	56	0	35	0	64	0.94
59073--59126	24	2.2	24	86	0	72	40	18	20	20	1.91
60140--60249	20	5.6	20	75	1	105	21	14	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60137--60249	40	2.8	40	89	1	174	21	15	21	41	1.90
60430--60939	232	2.2	229	88	6	744	39	20	13	27	1.89
61415--61490	29	2.6	30	72	25	74	72	2	2	22	1.10
61637--61661	2	12.5	2	100	0	50	52	0	0	48	1.00
61719--61768	15	2.9	18	74	17	52	72	6	2	20	1.16
61816--61849	11	3.0	11	86	4	50	76	2	0	20	0.92
63536--64097	161	3.4	165	86	2	724	24	20	25	30	1.99
68009--68041	16	2.0	17	94	5	59	30	39	6	24	1.79
70049--70091	16	2.7	16	100	0	86	18	4	18	58	1.56
80409--80463	18	3.1	18	82	17	71	72	0	18	9	1.10
80415--80489	36	2.2	33	83	13	89	73	0	18	8	1.07
80497--80522	7	3.7	7	100	0	52	76	0	11	11	1.01
80417--80544	43	3.0	42	73	15	118	72	0	19	7	1.08
80410--80560	25	6.0	25	73	20	113	71	0	20	7	1.11
81884--82402	161	3.2	161	82	7	597	30	15	24	29	1.96
81935--82402	217	2.1	216	85	5	622	30	16	23	30	1.96
81884--82431	55	10.1	54	82	7	544	29	15	23	30	1.96
86243--86284	16	2.7	15	82	13	57	80	2	2	14	0.90
86253--86285	17	1.9	17	93	0	57	78	0	3	18	0.87
87161--87545	189	2.0	190	95	0	691	24	15	13	46	1.82
88511--88568	23	2.6	23	94	5	102	39	3	12	44	1.58
88582--88616	13	2.8	13	91	4	54	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91739--91827	34	2.7	32	75	10	90	58	2	0	39	1.11
91742--91814	15	4.7	15	70	18	51	58	1	0	39	1.06
95055--95080	2	13.0	2	100	0	52	50	0	0	50	1.00
104199--104270	2	36.5	2	97	2	137	51	0	0	48	1.00
105248--105290	19	2.2	19	83	4	50	27	0	9	62	1.25
106768--106819	22	2.4	22	87	6	70	53	1	0	44	1.11
107500--107527	14	2.0	14	100	0	56	35	14	21	28	1.92
113149--113178	3	10.0	3	100	0	60	33	0	0	66	0.92
114989--115023	16	2.2	16	89	0	52	40	0	2	57	1.14
117866--117963	48	2.0	48	100	0	196	39	22	16	21	1.92
124964--124996	2	16.5	2	100	0	66	48	0	0	51	1.00
125463--125584	65	1.9	63	81	11	149	31	22	18	27	1.97
125493--125654	65	2.5	65	82	6	186	29	22	17	29	1.97
125625--125672	19	2.6	19	83	9	55	25	27	20	27	1.99
126470--126563	35	2.7	35	86	0	125	41	24	1	32	1.62
126714--127006	148	2.0	147	89	4	450	37	6	8	47	1.60
128224--128259	8	4.5	8	96	0	63	2	0	36	61	1.11
133741--133796	12	4.7	12	93	0	76	16	46	26	10	1.79
138699--138787	43	2.0	44	84	2	117	43	3	7	44	1.49
141212--141263	26	2.1	26	85	7	72	55	0	3	40	1.18
144165--144201	2	18.5	2	94	0	65	48	2	0	48	1.15
148111--148140	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148662--148700	19	2.1	18	85	9	51	15	15	17	51	1.77

Tables:   1

The End!