genome.fa.s3101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003101.1 Hibiscus syriacus cultivar Beakdansim tig00006474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77738

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4832--4873	10	4.4	10	79	11	52	0	9	11	78	0.96
7485--7529	15	3.0	15	96	0	81	20	22	20	37	1.94
14184--14308	52	2.6	45	74	16	124	36	16	4	42	1.69
14183--14288	52	2.0	53	94	1	187	38	13	4	43	1.65
14349--14694	81	4.3	81	83	5	423	29	23	10	37	1.88
14694--14997	68	4.5	68	90	0	493	28	24	16	30	1.96
14694--14997	135	2.2	136	92	0	502	28	24	16	30	1.96
15217--15360	55	2.6	55	83	2	191	33	16	13	36	1.88
16465--16539	35	2.1	35	92	0	123	33	29	28	9	1.88
16617--16691	24	3.2	24	84	1	107	36	20	17	26	1.94
16621--16697	23	3.3	23	81	3	100	36	19	18	25	1.94
17849--17886	18	2.1	18	90	0	58	31	18	0	50	1.47
19172--19241	18	4.2	18	70	17	69	14	17	48	20	1.81
19183--19213	13	2.4	13	94	0	53	16	19	48	16	1.81
19176--19236	31	2.0	31	90	0	95	16	16	47	19	1.83
21527--21580	19	2.7	19	85	8	63	38	16	14	29	1.89
21978--22286	54	5.8	54	85	4	392	31	20	16	31	1.95
21970--22311	160	2.1	161	83	3	429	30	19	18	31	1.96
26962--27011	24	2.0	24	85	11	66	24	6	10	60	1.51
30033--30178	73	2.0	73	100	0	292	26	31	12	30	1.92
31463--31523	27	2.3	27	91	5	97	36	13	16	34	1.87
31463--31535	27	2.7	28	87	8	89	34	16	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34239--34277	20	2.0	20	90	5	62	17	2	5	74	1.12
39321--39787	234	2.0	233	99	0	925	44	13	11	30	1.79
42289--42333	19	2.4	19	88	0	63	28	2	4	64	1.25
51589--51654	31	2.1	31	82	0	78	27	30	10	31	1.90
53349--53376	12	2.3	12	100	0	56	32	0	14	53	1.41
60859--60904	19	2.4	19	88	0	65	28	2	4	65	1.23
64071--64122	20	2.4	24	69	27	60	30	26	17	25	1.97
64080--64118	20	2.0	20	94	0	69	23	30	20	25	1.98
70175--70240	31	2.1	31	82	0	78	27	30	10	31	1.90
75756--75790	18	1.9	18	88	0	52	14	22	25	37	1.92

Tables:   1

The End!