genome.fa.s3102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003102.1 Hibiscus syriacus cultivar Beakdansim tig00006476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85890

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802--876	37	2.1	36	89	2	114	24	20	18	37	1.94
3226--3250	13	1.9	13	100	0	50	56	12	0	32	1.36
5646--5674	14	2.0	15	93	6	51	20	31	0	48	1.50
6676--6722	19	2.5	19	93	6	78	21	31	17	29	1.96
11810--11850	21	2.0	21	90	4	66	19	26	21	31	1.97
11884--11945	32	1.9	33	86	3	90	27	17	30	24	1.97
11881--11947	18	4.0	17	75	16	68	26	16	32	23	1.96
12064--12132	30	2.3	29	87	7	102	44	15	2	36	1.62
12287--12335	24	2.0	24	96	0	89	18	28	10	42	1.83
13428--13480	19	2.8	18	83	13	54	32	13	3	50	1.59
13488--13528	19	2.1	20	86	13	59	31	0	12	56	1.36
15388--15451	17	3.7	17	91	2	92	26	14	35	23	1.93
15696--15755	21	2.9	21	82	12	61	68	1	0	30	0.99
15710--15747	13	2.9	13	84	11	51	68	2	0	28	1.03
15711--15758	7	7.3	6	80	15	51	64	2	0	33	1.05
15696--15758	15	4.6	14	74	18	53	66	1	0	31	1.01
15745--15867	26	5.4	23	72	23	93	47	4	2	44	1.37
15830--16058	36	6.0	36	78	13	201	44	7	2	44	1.45
15988--16012	2	12.5	2	100	0	50	48	0	0	52	1.00
15949--16048	44	2.3	45	86	5	134	46	8	3	43	1.48
18765--18900	72	1.9	72	92	0	227	21	23	22	32	1.98
29267--29296	15	2.0	15	93	0	51	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33440--33485	19	2.5	20	82	13	62	34	6	0	58	1.24
33370--33485	37	3.2	36	67	20	98	35	6	1	56	1.34
33465--33501	13	2.7	14	84	15	51	37	2	0	59	1.12
34092--34151	23	2.6	23	86	0	84	38	25	11	25	1.89
34173--34220	18	2.7	18	80	0	51	52	12	14	20	1.74
34259--34333	9	8.4	9	72	16	59	50	4	0	45	1.20
34393--34449	18	3.2	17	80	14	53	45	5	0	49	1.24
34216--34665	139	3.2	140	91	5	690	47	9	2	40	1.48
34486--34515	12	2.4	13	88	11	53	53	13	0	33	1.40
34548--34803	2	126.0	2	66	19	95	46	4	5	44	1.45
34548--34803	15	17.3	15	65	18	67	46	4	5	44	1.45
34582--34663	11	7.8	10	70	22	53	47	2	2	47	1.28
34252--34719	139	3.2	142	84	7	563	46	7	2	42	1.47
34556--34744	20	9.5	20	71	18	110	46	3	4	46	1.40
34739--34907	18	8.9	19	69	23	65	43	5	9	40	1.61
34792--34905	35	3.2	35	82	9	142	42	5	9	42	1.60
34937--35037	33	3.1	31	82	13	114	50	1	5	41	1.38
35149--35222	33	2.2	33	85	4	96	48	1	2	47	1.24
35091--35200	2	57.5	2	72	18	83	50	2	0	45	1.22
35292--35331	18	2.2	18	90	0	62	40	5	10	45	1.60
35325--35405	20	4.0	21	79	12	89	44	4	3	46	1.42
35483--36178	210	3.3	214	91	3	1095	28	11	8	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38175--38217	22	2.0	22	95	0	77	44	6	2	46	1.43
38210--38264	19	2.9	19	84	7	69	43	3	9	43	1.53
38282--38398	16	7.7	15	77	15	91	41	1	0	57	1.09
38319--38436	21	5.5	21	76	16	84	38	0	0	60	1.03
38282--38440	32	4.9	33	82	11	161	40	1	0	58	1.06
38381--38440	11	5.4	11	84	11	86	38	0	0	61	0.96
38378--38450	24	3.3	21	71	15	58	42	0	0	57	0.98
45838--45892	23	2.4	23	93	3	94	21	23	27	27	1.99
46215--46370	43	3.4	43	66	13	123	35	25	18	20	1.95
46213--46749	106	5.3	97	90	6	726	34	24	18	23	1.96
46304--46725	106	4.0	106	96	0	763	34	24	17	23	1.96
51470--51510	21	2.0	21	85	0	55	39	12	36	12	1.80
54471--54533	27	2.3	29	76	17	73	39	4	7	47	1.54
56513--56547	17	2.1	17	94	0	61	31	28	8	31	1.87
63057--63108	16	3.2	17	72	22	58	42	0	21	36	1.53
65100--65206	52	2.1	52	82	7	128	38	6	8	46	1.60
68242--68275	18	1.9	18	88	5	52	17	26	29	26	1.98
75282--75374	45	2.1	45	81	0	105	24	38	11	24	1.89
76771--76839	22	3.0	23	89	4	104	55	13	11	20	1.68
80592--80650	31	1.9	31	96	0	109	57	10	15	16	1.64
80872--80921	25	2.0	25	92	0	82	64	12	2	22	1.37

Tables:   1

The End!