genome.fa.s3103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003103.1 Hibiscus syriacus cultivar Beakdansim tig00006477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65787

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8781--8813	16	2.0	17	88	5	50	33	6	24	36	1.80
9017--9098	23	3.5	23	77	12	87	18	26	26	28	1.98
9803--9845	21	2.0	21	95	0	77	23	25	27	23	2.00
9870--9916	24	2.0	24	88	8	71	17	14	19	48	1.81
10302--10391	24	3.8	24	77	0	72	26	21	17	34	1.95
10375--10479	24	4.3	25	70	14	78	23	22	15	38	1.92
10516--10560	18	2.6	18	82	3	56	62	4	20	13	1.48
11863--11912	24	2.1	24	88	7	75	54	2	0	44	1.11
11978--12036	31	1.9	31	83	13	77	52	1	3	42	1.28
12056--12114	17	3.4	16	73	26	57	52	3	1	42	1.28
12111--12145	14	2.5	15	86	13	56	60	0	0	40	0.97
14980--15045	31	2.1	32	97	2	125	33	22	19	24	1.97
15274--15304	15	2.1	15	93	0	53	41	0	0	58	0.98
23605--23671	34	2.0	34	82	11	84	43	2	4	49	1.38
23645--23684	21	2.0	20	90	5	62	52	0	0	47	1.00
23451--23896	189	2.4	189	85	3	567	39	5	8	47	1.56
29247--29396	60	2.5	60	92	0	237	31	22	5	41	1.76
29677--29719	17	2.6	17	86	13	56	39	0	0	60	0.97
30623--30690	21	3.2	20	69	22	59	20	17	27	33	1.95
30772--30798	6	4.5	6	100	0	54	33	51	14	0	1.43
31544--31698	21	7.4	21	65	17	99	30	28	20	20	1.98
31521--31818	42	7.2	42	93	1	503	31	24	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33496--33549	20	2.8	19	83	10	65	53	0	3	42	1.18
33511--33550	20	2.0	20	95	0	71	55	0	7	37	1.29
33511--33568	20	2.8	20	84	10	55	56	0	5	37	1.21
35700--35770	32	2.2	32	94	0	124	12	18	25	43	1.85
44088--44176	44	2.0	44	100	0	178	31	8	32	26	1.87
44295--44324	2	15.0	2	100	0	60	50	50	0	0	1.00
48266--48319	20	2.6	21	82	11	58	29	12	22	35	1.91
48391--48444	21	2.6	21	82	11	67	29	16	20	33	1.95
53328--53398	24	3.0	24	81	2	90	19	23	25	30	1.98
54058--54101	12	3.7	12	90	0	61	18	20	20	40	1.91
62162--62218	19	3.0	17	76	19	51	8	12	21	57	1.61

Tables:   1

The End!