Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003105.1 Hibiscus syriacus cultivar Beakdansim tig00006486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73521

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6821--6891
19
3.6
19
68
7
61
30
19
23
25
1.98
6820--6912
40
2.3
40
98
0
177
30
21
23
24
1.99
6840--6913
21
3.6
21
70
7
80
29
22
21
25
1.99
12617--12680
21
3.0
21
70
17
60
70
1
3
25
1.11
12617--12678
10
6.0
10
74
10
54
70
1
3
24
1.10
12737--12775
18
2.2
17
86
4
51
61
0
0
38
0.96
13478--13550
29
2.4
31
75
22
75
41
4
1
53
1.28
13620--13668
10
4.8
10
90
5
80
22
2
0
75
0.90
13620--13669
21
2.4
21
93
3
84
24
2
0
74
0.93
15013--15063
22
2.3
22
96
0
93
25
31
35
7
1.85
18468--18499
2
16.0
2
100
0
64
50
0
0
50
1.00
18877--18974
32
3.1
32
94
2
164
32
10
27
29
1.90
25025--25417
195
2.0
196
98
0
770
34
17
16
31
1.93
28195--28227
16
2.0
17
94
5
59
36
18
18
27
1.94
32827--32880
9
5.7
9
83
12
72
14
25
31
27
1.95
32826--32886
19
3.2
19
97
2
113
18
26
29
26
1.98
32890--32947
17
3.4
17
95
0
107
18
37
24
18
1.94
32941--32973
7
4.9
7
92
7
59
15
27
30
27
1.96
32943--32969
13
2.1
13
100
0
54
14
29
29
25
1.95
33843--33919
31
2.5
31
78
2
82
15
27
29
27
1.96
36752--36829
15
5.2
15
93
0
138
30
33
21
14
1.93
36752--36829
30
2.6
30
100
0
156
30
33
21
14
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36914--36987
29
2.6
29
97
2
141
18
21
16
43
1.88
37003--37048
12
3.8
12
91
0
56
39
26
6
28
1.81
37003--37049
24
2.0
24
87
8
69
38
25
6
29
1.81
37016--37049
12
2.8
12
95
0
59
41
26
2
29
1.70
37358--37582
64
3.5
62
82
7
229
28
20
19
31
1.97
43157--43204
15
3.2
15
93
0
87
31
33
20
14
1.93
43289--43362
29
2.6
29
97
2
141
18
21
16
43
1.88
43378--43423
12
3.8
12
91
0
56
39
26
6
28
1.81
43378--43424
24
2.0
24
87
8
69
38
25
6
29
1.81
43391--43424
12
2.8
12
95
0
59
41
26
2
29
1.70
43733--43893
64
2.5
64
83
5
200
25
21
21
31
1.98
43794--43957
64
2.6
65
84
3
199
28
21
18
31
1.97
48842--48882
7
6.0
7
88
5
66
14
26
29
29
1.95
48842--48882
13
3.0
14
85
7
66
14
26
29
29
1.95
48845--48883
20
2.0
20
100
0
78
15
25
28
30
1.96
49752--49875
63
2.0
63
82
6
153
18
28
27
25
1.98
49752--49828
31
2.5
31
78
2
82
15
27
29
27
1.96
51597--51648
17
3.0
17
82
2
68
73
0
1
25
0.94
67242--67281
16
2.5
15
88
12
53
65
2
0
32
1.06
67246--67284
15
2.5
15
83
4
51
69
2
0
28
1.02
67516--67565
22
2.3
21
80
16
57
40
2
0
58
1.10

Tables:   1

The End!