genome.fa.s3106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003106.1 Hibiscus syriacus cultivar Beakdansim tig00006489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148070

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3566--3593	13	2.2	13	100	0	56	35	28	7	28	1.84
3696--3753	13	4.5	13	79	10	66	53	12	1	32	1.48
3696--3753	26	2.3	26	85	8	75	53	12	1	32	1.48
14714--14752	19	2.0	20	95	5	71	35	0	0	64	0.94
28861--28915	20	2.8	20	73	15	60	34	29	18	18	1.94
28964--29259	20	14.6	20	73	11	158	39	24	17	18	1.92
29045--29256	41	5.2	41	90	1	320	38	24	17	19	1.93
29816--29893	20	3.9	21	81	9	92	51	19	17	11	1.76
29816--29904	40	2.2	40	78	7	101	50	21	16	11	1.76
29900--29978	19	4.1	19	86	3	113	12	22	18	45	1.84
29900--29978	39	2.1	38	87	2	113	12	22	18	45	1.84
31668--32047	94	4.1	93	92	1	589	22	11	17	48	1.80
32154--32207	14	3.5	14	77	22	63	44	22	25	7	1.79
32111--32224	19	6.5	19	69	22	81	47	20	21	10	1.80
32135--32245	33	3.4	33	91	2	172	46	21	22	9	1.79
32255--32313	17	3.5	17	77	17	70	10	23	23	42	1.85
34208--34243	14	2.6	14	95	0	63	33	0	22	44	1.53
34350--34408	19	3.4	19	68	22	65	47	18	20	13	1.82
34354--34429	33	2.3	33	90	0	116	48	21	19	10	1.78
34472--34577	20	5.7	19	73	13	96	15	22	19	42	1.88
34439--34619	33	5.3	33	81	9	209	14	23	18	43	1.87
37147--37200	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37147--37214	24	2.8	24	84	0	64	38	20	17	23	1.93
37839--38086	20	12.4	20	82	7	245	20	17	22	39	1.92
37818--37967	60	2.5	58	81	10	137	23	18	21	37	1.94
37836--38028	98	2.0	98	83	4	246	21	17	21	39	1.92
37839--38105	40	6.7	40	87	3	306	20	17	23	38	1.93
38114--38166	20	2.7	20	82	5	63	13	16	22	47	1.82
37994--38148	61	2.5	60	76	9	143	17	18	25	38	1.92
38216--38269	20	2.7	19	75	8	63	18	18	29	33	1.95
40206--40247	20	2.1	20	90	0	66	28	30	9	30	1.89
40337--40405	20	3.5	20	76	7	77	30	24	10	34	1.89
41329--41382	24	2.2	24	86	0	72	24	16	18	40	1.90
42491--42651	64	2.5	65	86	7	204	33	18	21	26	1.96
43143--43177	18	1.9	18	88	11	54	54	5	17	22	1.64
43304--43337	2	17.0	2	100	0	68	50	0	0	50	1.00
43529--43578	2	25.0	2	100	0	100	50	0	0	50	1.00
44123--44437	149	2.1	149	92	2	535	26	17	21	34	1.95
47581--47741	64	2.5	65	85	7	195	33	17	21	27	1.96
48233--48269	18	2.1	18	90	10	58	54	5	16	24	1.63
49161--49475	149	2.1	149	94	2	553	26	17	21	34	1.96
49443--49487	23	2.0	23	90	0	72	22	26	26	24	2.00
52326--52371	20	2.3	20	88	0	65	50	13	19	17	1.78
53868--53985	21	5.6	21	79	0	110	25	14	35	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54327--54375	21	2.3	21	79	6	55	32	34	12	20	1.90
54282--54375	42	2.2	43	77	5	111	34	32	11	21	1.89
54319--54438	63	1.9	63	81	10	147	30	33	14	22	1.93
54394--54443	21	2.4	21	96	0	91	34	30	14	22	1.93
54548--54644	42	2.3	42	89	0	140	19	19	32	27	1.96
56553--56664	22	5.1	22	85	0	152	18	16	46	18	1.84
57539--57618	20	4.0	20	93	3	126	37	18	20	23	1.94
57568--57628	20	3.0	20	88	4	61	36	19	21	22	1.95
58480--58533	24	2.2	24	90	0	81	22	18	18	40	1.91
60965--61053	20	4.4	20	85	2	126	34	23	22	19	1.96
61058--61145	19	4.8	19	74	16	96	46	17	20	15	1.84
61005--61145	53	2.7	53	84	3	176	41	19	22	16	1.89
61156--61235	20	4.4	19	74	18	71	15	22	20	42	1.88
61188--61239	19	2.7	19	84	3	68	15	23	23	38	1.92
61337--61373	14	2.6	14	86	0	56	48	21	0	29	1.50
62758--62809	21	2.5	22	78	9	63	21	17	38	23	1.93
63369--63548	20	9.4	20	81	7	194	38	20	20	20	1.93
63449--63567	34	3.4	34	75	15	132	36	21	23	18	1.95
63409--63567	73	2.2	73	93	1	264	37	20	22	19	1.94
63557--63703	20	7.8	20	84	10	175	18	20	21	40	1.92
66028--66089	18	3.0	22	69	26	62	17	16	38	27	1.91
66284--66357	20	3.7	20	78	3	94	21	21	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66347--66399	21	2.5	21	84	6	72	35	18	24	20	1.95
73544--73574	8	3.9	8	100	0	62	61	12	12	12	1.58
74589--74638	23	2.1	24	85	10	68	36	6	2	56	1.36
74670--74705	2	18.0	2	100	0	72	50	0	0	50	1.00
76325--76370	21	2.2	21	92	0	74	19	32	23	23	1.97
77044--77073	14	2.1	14	100	0	60	60	6	0	33	1.23
77359--77679	127	2.5	127	92	2	529	35	19	23	21	1.96
77614--77744	65	2.0	66	92	1	219	37	16	22	23	1.93
77680--78319	127	5.0	127	90	5	1011	33	22	22	21	1.97
81800--81997	21	9.6	21	73	10	124	21	19	21	36	1.95
81806--82025	42	5.3	40	81	4	219	23	19	20	36	1.95
81806--82026	21	10.8	19	72	12	118	23	19	20	36	1.95
81846--82018	19	8.4	21	71	14	105	22	18	19	39	1.93
82883--83096	42	5.1	42	95	1	378	35	22	21	21	1.96
83092--83144	21	2.5	21	93	0	88	16	20	32	30	1.95
84637--84686	23	2.1	24	85	10	68	36	6	2	56	1.36
85449--85483	18	1.9	18	88	0	52	25	5	14	54	1.62
87629--87780	32	4.8	31	67	9	92	29	21	17	31	1.96
88974--89012	20	2.0	20	84	0	51	17	41	2	38	1.64
89889--89922	13	2.6	13	85	0	50	5	14	2	76	1.09
97197--97238	19	2.2	20	86	4	59	30	7	2	59	1.37
97314--97376	21	2.8	23	77	18	62	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99259--99604	170	2.0	171	99	0	685	30	18	23	27	1.98
101073--101119	12	3.9	12	86	5	60	36	21	23	19	1.95
101078--101125	24	2.1	22	88	7	69	39	20	20	18	1.92
102767--102800	11	2.8	12	91	8	52	73	0	0	26	0.83
104239--104286	23	2.0	24	88	11	73	54	0	0	45	0.99
104789--104817	14	2.0	15	93	6	51	31	13	0	55	1.39
113620--113673	20	2.7	20	85	0	72	31	25	1	40	1.66
113710--113768	20	3.0	20	95	2	102	23	27	10	38	1.87
114357--114418	20	3.0	21	85	7	81	17	19	19	43	1.88
114386--114424	20	2.0	20	89	0	60	12	25	23	38	1.90
114394--114621	41	5.5	41	82	7	284	27	23	19	29	1.98
114396--114621	83	2.7	82	90	5	357	27	23	19	29	1.98
114620--114678	27	2.2	27	90	0	91	30	22	15	32	1.94
115067--115242	20	8.6	20	63	8	77	32	20	25	21	1.97
115009--115196	41	4.6	41	95	1	333	28	19	25	26	1.99
115009--115242	123	1.9	123	83	4	303	30	20	24	24	1.98
118516--118587	27	2.7	27	100	0	144	38	2	2	55	1.29
119277--119316	20	2.0	21	95	5	73	42	2	0	55	1.13
122604--122936	164	2.0	166	98	1	643	24	15	27	33	1.95
125686--125818	71	1.9	72	93	1	232	36	19	11	33	1.87
131285--131311	2	13.5	2	100	0	54	51	0	0	48	1.00
133514--133552	21	1.9	20	89	5	60	64	10	12	12	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134412--134447	2	18.0	2	100	0	72	50	0	0	50	1.00
140493--140548	29	1.9	29	96	0	103	10	33	30	25	1.90
140559--140623	23	2.8	23	88	0	94	7	38	30	23	1.83
140587--140695	33	3.3	33	89	0	146	11	31	30	26	1.92
140733--140790	29	2.0	29	86	0	80	25	27	32	13	1.94
141660--141710	22	2.3	22	89	3	75	56	1	9	31	1.43

Tables:   1

The End!