genome.fa.s3107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003107.1 Hibiscus syriacus cultivar Beakdansim tig00006491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65166

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77--136	22	2.8	22	94	2	104	20	26	28	25	1.99
7164--7190	4	6.8	4	100	0	54	51	22	0	25	1.48
7311--7418	41	2.7	37	72	17	90	45	11	1	41	1.50
7428--7467	21	1.9	21	100	0	80	55	15	0	30	1.41
7495--7555	18	3.8	18	66	29	57	54	6	0	39	1.27
7495--7556	29	2.2	27	79	17	81	53	6	0	40	1.27
7793--7832	21	1.9	21	100	0	80	57	15	0	27	1.38
7820--7904	39	2.2	39	97	0	161	42	16	2	38	1.61
7831--7928	39	2.5	37	85	9	133	44	15	2	37	1.58
8136--8218	11	7.2	11	71	10	67	43	18	20	18	1.88
8132--8216	23	3.7	23	90	4	127	43	17	20	18	1.88
8337--8452	29	4.0	29	85	3	162	16	32	28	22	1.95
14676--14829	20	7.8	20	69	15	90	40	20	20	18	1.91
14734--14842	35	2.9	37	86	10	150	38	22	21	17	1.93
14738--14842	20	5.4	19	73	13	90	37	23	20	18	1.94
14951--15007	6	9.5	6	100	0	114	33	50	15	0	1.44
15760--15857	6	15.8	6	94	5	169	0	17	48	33	1.47
15968--16099	20	6.4	20	78	10	115	17	21	25	34	1.95
15968--16099	62	2.1	62	84	2	167	17	21	25	34	1.95
16090--16161	20	3.6	20	88	3	92	15	19	18	47	1.83
16129--16181	19	2.7	19	88	2	70	18	16	22	41	1.90
16966--16992	14	1.9	14	100	0	54	7	7	22	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27285--27450	60	2.7	60	77	1	170	33	19	5	41	1.75
36374--36411	20	1.9	20	94	0	67	23	34	28	13	1.92
39574--39664	42	2.2	42	89	0	137	31	12	41	14	1.82
39767--39832	2	34.0	2	81	6	82	48	0	0	51	1.00
41998--42031	8	4.2	8	92	0	50	50	0	0	50	1.00
48454--48529	40	1.9	40	100	0	152	38	14	10	36	1.81
52717--52784	34	2.0	34	94	0	118	29	17	32	20	1.96
53024--53092	33	2.1	33	91	2	113	34	17	14	33	1.90
56194--56271	39	2.0	39	100	0	156	20	20	10	48	1.78
63813--63858	23	2.0	23	87	4	67	39	10	2	47	1.51
64813--64910	33	3.0	33	92	0	151	27	30	28	13	1.94
64884--64949	24	2.8	23	84	4	87	22	30	39	7	1.82
64960--65012	28	1.9	27	88	11	81	24	30	33	11	1.90

Tables:   1

The End!