Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003108.1 Hibiscus syriacus cultivar Beakdansim tig00006492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126883

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15067--15099
2
16.5
2
100
0
66
51
0
0
48
1.00
15127--15205
22
3.6
22
71
6
70
30
25
21
22
1.99
21051--21109
27
2.2
27
100
0
118
35
23
25
15
1.94
21790--21848
23
2.6
23
88
0
91
32
28
25
13
1.94
30414--30503
23
3.9
23
79
5
101
37
24
22
15
1.93
38554--38594
19
2.2
19
86
8
57
12
12
0
75
1.05
38669--38723
22
2.5
22
93
0
101
21
40
1
36
1.64
43144--43275
19
7.6
18
72
15
93
49
1
5
43
1.34
43144--43223
37
2.3
35
86
6
108
48
1
5
45
1.32
43183--43287
47
2.2
48
84
8
133
48
1
4
44
1.34
43266--43312
23
2.0
25
87
8
71
44
2
6
46
1.40
46606--46739
39
3.4
39
74
8
128
35
17
24
22
1.96
47616--47698
28
3.0
27
78
3
94
26
9
19
44
1.81
48719--48755
15
2.5
15
95
0
65
67
0
27
5
1.12
50160--50205
20
2.3
19
85
14
58
50
8
15
26
1.73
53130--53193
18
3.4
18
81
10
74
76
15
6
1
1.06
53130--53200
10
7.5
10
78
10
78
74
16
7
1
1.10
53149--53200
9
5.6
9
84
6
68
71
19
9
0
1.13
53142--53200
28
2.1
27
93
3
100
74
16
8
0
1.05
61745--61796
12
4.5
12
83
9
63
5
9
13
71
1.30
61746--61813
22
3.1
22
74
13
61
2
8
11
76
1.12
65800--65863
12
5.3
12
84
0
65
0
6
12
81
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71865--71910
22
2.1
21
92
4
74
0
4
13
82
0.81
85255--86034
389
2.0
386
86
5
1088
22
23
14
39
1.91
86195--86231
10
3.7
10
100
0
74
91
8
0
0
0.41
87600--87636
10
3.7
10
85
0
56
86
8
5
0
0.70
92041--92104
8
8.0
8
76
10
60
82
9
4
3
0.91
92041--92103
17
3.9
15
78
19
58
82
9
4
3
0.92
92053--92112
19
3.2
19
79
11
70
80
10
6
3
1.01
96663--96700
11
3.5
11
89
3
60
92
7
0
0
0.40
96656--96699
19
2.3
19
96
0
79
90
6
0
2
0.51
96656--96700
1
45.0
1
81
0
54
91
6
0
2
0.50
99068--99106
10
3.8
10
96
3
69
0
10
7
82
0.86
99066--99116
11
4.5
11
79
13
50
0
7
7
84
0.78
99066--99116
10
4.4
13
83
14
51
0
7
7
84
0.78
99067--99107
11
3.8
11
90
6
66
0
9
7
82
0.83
99068--99107
21
1.9
21
94
0
71
0
10
7
82
0.84
99469--99516
26
1.9
25
87
8
71
70
0
8
20
1.12
112384--112436
21
2.5
20
85
8
70
20
20
22
35
1.96
124820--124878
4
14.8
4
96
0
109
50
22
0
27
1.49
124904--124973
22
3.2
22
72
8
61
37
20
15
27
1.93
125718--125803
20
4.3
20
82
8
113
33
12
20
32
1.91

Tables:   1

The End!