Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003109.1 Hibiscus syriacus cultivar Beakdansim tig00006498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50558

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4794--4953
67
2.4
67
82
3
171
40
14
15
29
1.87
4828--4955
67
1.9
67
86
0
184
40
15
16
27
1.89
17092--17131
21
2.0
21
85
9
57
62
7
15
15
1.53
31163--31215
26
2.0
26
96
0
97
18
18
11
50
1.76
31207--31508
34
7.9
34
72
21
118
28
25
10
35
1.90
31198--31640
79
5.6
79
91
0
715
27
24
11
35
1.90
31399--31632
45
5.7
43
71
20
189
27
26
12
34
1.92
32049--32119
19
3.5
19
80
12
79
28
25
15
30
1.96
32145--32195
20
2.5
21
84
9
70
19
33
15
31
1.93
33870--33919
25
2.0
25
96
0
91
44
10
0
46
1.37
35408--35448
2
22.0
2
80
14
52
43
0
2
53
1.13
36625--36677
19
2.8
19
76
0
61
39
0
13
47
1.43
37974--38041
22
3.0
22
75
21
61
36
11
5
45
1.65
38084--38183
44
2.3
42
83
13
114
52
4
4
40
1.39
38032--38851
197
4.2
197
82
6
908
48
8
4
39
1.52
38509--38844
99
3.4
97
68
16
249
49
8
3
38
1.50
39152--39192
21
1.9
22
85
5
57
36
4
19
39
1.73
39859--39910
20
2.5
21
84
9
70
23
15
25
36
1.93
42423--42454
17
1.9
16
93
6
55
56
0
0
43
0.99
42771--42822
20
2.5
21
81
9
63
48
0
3
48
1.20
42808--42870
18
3.3
18
75
6
54
44
0
3
52
1.17
43974--44026
19
2.8
19
76
0
61
39
0
13
47
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49123--49452
58
5.7
58
82
7
305
36
7
12
43
1.70
49353--49536
99
1.9
100
82
3
237
37
7
9
45
1.65

Tables:   1

The End!