Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003110.1 Hibiscus syriacus cultivar Beakdansim tig00006499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101929
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Found at i:2791 original size:75 final size:75
Alignment explanation
Indices: 2668--2875 Score: 278
Period size: 75 Copynumber: 2.8 Consensus size: 75
2658 ATTTTAAACA
* **
2668 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGAGTTA
*
2733 GGATATTATT
66 GAATATTATT
* *
2743 TTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAGTAGGTTTTAGTATTTTAATTAGGAGTTA
1 TTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGAGTTA
2808 GAATATTATT
66 GAATATTATT
* * * *
2818 TTAAATATTAT-TAATGTTTTA-AGTATTTTAGTTTAAATA-GTTTTAAGTGTTTTAATTA
1 TTATATTTTATCT-TTGTTTTAGA-TATTTTAGTTTAAATAGGTTTT-AGTATTTTAATTA
2876 GAATTTAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
74 7 0.06
75 112 0.94
ACGTcount: A:0.29, C:0.01, G:0.13, T:0.57
Consensus pattern (75 bp):
TTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGAGTTA
GAATATTATT
Found at i:10262 original size:36 final size:38
Alignment explanation
Indices: 10203--10279 Score: 97
Period size: 36 Copynumber: 2.1 Consensus size: 38
10193 ATGAAAAAAA
10203 TTCACTGTTTCAAAAAAATCAGAAAAAACAACA-ACTTG
1 TTCACTGTTTCAAAAAAATCAGAAAAAA-AACACACTTG
* * *
10241 TTCACTGTTTC-GAACAA-CAGAAAAAAAACACCCTTG
1 TTCACTGTTTCAAAAAAATCAGAAAAAAAACACACTTG
10277 TTC
1 TTC
10280 GGAAAAAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 4 0.11
36 16 0.46
37 4 0.11
38 11 0.31
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.25
Consensus pattern (38 bp):
TTCACTGTTTCAAAAAAATCAGAAAAAAAACACACTTG
Found at i:11237 original size:44 final size:43
Alignment explanation
Indices: 11187--11314 Score: 109
Period size: 44 Copynumber: 3.2 Consensus size: 43
11177 TTTAAACATT
11187 ATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTA
1 ATATTTTATCTTTGTTTTAGGTATTTTA-TTTAAATAGGTTTTA
** *
11231 ATATTTTAAT-TAAGTTTTAGG-A---TA--T---T--GTTTTT
1 ATATTTT-ATCTTTGTTTTAGGTATTTTATTTAAATAGGTTTTA
11263 ATATTTTATCTTTGTTTTAGGTATTTTATTTTAAATAGGTTTTA
1 ATATTTTATCTTTGTTTTAGGTATTTTA-TTTAAATAGGTTTTA
*
11307 GTATTTTA
1 ATATTTTA
11315 ATTAGGATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 28
0.64 0.07 0.29
Matches are distributed among these distances:
31 2 0.03
32 21 0.33
33 1 0.02
34 1 0.02
36 2 0.03
37 1 0.02
39 1 0.02
40 2 0.03
42 1 0.02
43 1 0.02
44 28 0.44
45 2 0.03
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (43 bp):
ATATTTTATCTTTGTTTTAGGTATTTTATTTAAATAGGTTTTA
Found at i:11313 original size:19 final size:19
Alignment explanation
Indices: 11289--11326 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
11279 TTAGGTATTT
*
11289 TATTTTAAATAGGTTTTAG
1 TATTTTAAATAGGATTTAG
*
11308 TATTTTAATTAGGATTTAG
1 TATTTTAAATAGGATTTAG
11327 AATATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (19 bp):
TATTTTAAATAGGATTTAG
Found at i:11389 original size:75 final size:77
Alignment explanation
Indices: 11192--11400 Score: 291
Period size: 76 Copynumber: 2.8 Consensus size: 77
11182 ACATTATATT
* * *
11192 TTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAA-TATTTTAATTAAGTTTTAGGATAT
1 TTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAAGTATTTTAATTAGGATTTAGAATAT
* * *
11256 TGTTTTTATATT
66 TGATTTTAAATA
*
11268 TTATCTTTGTTTTAGGTATTTTATTTTAAATAGGTTTT-AGTATTTTAATTAGGATTTAGAATAT
1 TTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAAGTATTTTAATTAGGATTTAGAATAT
11332 T-ATTTTAAATA
66 TGATTTTAAATA
* ** *
11343 TTATTTTTGTTTTAAATATTTTAGTTTAAATA-GTTTTAAGTGTTTTAATTAGGATTTA
1 TTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAAGTATTTTAATTAGGATTTA
11401 AGATGTTTTA
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
74 5 0.04
75 55 0.46
76 59 0.50
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (77 bp):
TTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAAGTATTTTAATTAGGATTTAGAATAT
TGATTTTAAATA
Found at i:18119 original size:29 final size:29
Alignment explanation
Indices: 18077--18158 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
18067 AAACTAAATT
18077 GATGTCATTGCTTACATCATTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
18106 GATGTCATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
18135 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
18159 GTTAGATGAG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 46 0.90
30 5 0.10
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:22856 original size:29 final size:29
Alignment explanation
Indices: 22814--22895 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
22804 AAACTAAATT
22814 GATGTCATTGCTTACATCATTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
22843 GATGTCATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
22872 GATATCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
22896 GTTAGATGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:28026 original size:2 final size:2
Alignment explanation
Indices: 28019--28044 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28009 ATAGCTTTTA
28019 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
28045 TAATGAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30302 original size:22 final size:22
Alignment explanation
Indices: 30275--30354 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
30265 TCATATAACG
30275 AAAGTGTCATAGCACTAATACT
1 AAAGTGTCATAGCACTAATACT
* * * * *
30297 AGAGTGCCACAGAACTGATACT
1 AAAGTGTCATAGCACTAATACT
* *
30319 AAAGTG-CATTCA-CACTTATACA
1 AAAGTGTCA-T-AGCACTAATACT
30341 AAAGTGTCATAGCA
1 AAAGTGTCATAGCA
30355 TAGGGGAAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
21 3 0.07
22 38 0.86
23 3 0.07
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (22 bp):
AAAGTGTCATAGCACTAATACT
Found at i:30647 original size:21 final size:21
Alignment explanation
Indices: 30617--30665 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
30607 CCGTCAATAC
30617 CGATACTAAGCTTGTAAGTAT
1 CGATACTAAGCTTGTAAGTAT
* *
30638 TGATATTAAGCTTGTAAGTAT
1 CGATACTAAGCTTGTAAGTAT
30659 CGATACT
1 CGATACT
30666 GGCCTTAGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (21 bp):
CGATACTAAGCTTGTAAGTAT
Found at i:33818 original size:17 final size:17
Alignment explanation
Indices: 33781--33821 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
33771 TTCATGTCTT
* *
33781 TTTTTTTCGAACAGTTT
1 TTTTTTTCGAACAGCTA
*
33798 TTTTTTTCGAACTGCTA
1 TTTTTTTCGAACAGCTA
33815 TTTTTTT
1 TTTTTTT
33822 TGTGATGGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.63
Consensus pattern (17 bp):
TTTTTTTCGAACAGCTA
Found at i:34676 original size:13 final size:12
Alignment explanation
Indices: 34657--34690 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
34647 GCTTAATCGG
34657 AAAAAAAATAAA
1 AAAAAAAATAAA
*
34669 AGAAAAAATAAA
1 AAAAAAAATAAA
*
34681 AATAAAAATA
1 AAAAAAAATA
34691 TAACGGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAAAAAATAAA
Found at i:45157 original size:24 final size:25
Alignment explanation
Indices: 45112--45170 Score: 111
Period size: 24 Copynumber: 2.4 Consensus size: 25
45102 AACTATATTT
45112 AATTAATTAATATTTTTTAATAATC
1 AATTAATTAATATTTTTTAATAATC
45137 AATTAATTAATA-TTTTTAATAATC
1 AATTAATTAATATTTTTTAATAATC
45161 AATTAATTAA
1 AATTAATTAA
45171 GAGTAAGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 22 0.65
25 12 0.35
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTAATTAATATTTTTTAATAATC
Found at i:51906 original size:19 final size:20
Alignment explanation
Indices: 51876--51919 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
51866 TCAGTTCAAC
51876 CTTTATA-TTTTTAGGTTAA
1 CTTTATATTTTTTAGGTTAA
51895 CATTTA-ATTTTTTAGGTTAA
1 C-TTTATATTTTTTAGGTTAA
51915 CTTTA
1 CTTTA
51920 GTCATTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.57
Consensus pattern (20 bp):
CTTTATATTTTTTAGGTTAA
Found at i:52299 original size:3 final size:3
Alignment explanation
Indices: 52293--52318 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
52283 CAACAACAAC
52293 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
52319 AATTATTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:56139 original size:44 final size:48
Alignment explanation
Indices: 56073--56169 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 48
56063 TTATTTTCGT
56073 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGG-TTTA
1 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
* *
56120 TTTTT-GAAT-AA-GCATGCGAATTAGATATCATGCGGTTAGGATTTC
1 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
56165 TTTTT
1 TTTTT
56170 ATGGATAACA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
44 28 0.60
45 10 0.21
46 4 0.09
47 5 0.11
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (48 bp):
TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
Found at i:65877 original size:8 final size:7
Alignment explanation
Indices: 65823--65958 Score: 76
Period size: 7 Copynumber: 18.0 Consensus size: 7
65813 AAGAAGAAAT
*
65823 AAAAGGA
1 AAAAAGA
*
65830 AAAACGA
1 AAAAAGA
*
65837 AAAACGA
1 AAAAAGA
* *
65844 AAGAATA
1 AAAAAGA
*
65851 AAAATGA
1 AAAAAGA
65858 GAAAAAG-
1 -AAAAAGA
65865 AAAAAGA
1 AAAAAGA
65872 AGAAAAGAA
1 A-AAAAG-A
65881 AAAATGAGA
1 AAAA--AGA
*
65890 AAAAATA
1 AAAAAGA
65897 AAAATGAGA
1 AAAA--AGA
*
65906 AAAAATA
1 AAAAAGA
*
65913 AAAATGA
1 AAAAAGA
65920 AAAAAGA
1 AAAAAGA
*
65927 AAGAAAAA
1 AA-AAAGA
65935 TAAAAAGA
1 -AAAAAGA
65943 GAAAAATGA
1 -AAAAA-GA
65952 AAAAAGA
1 AAAAAGA
65959 GAAATAAAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
6 6 0.06
7 45 0.45
8 31 0.31
9 17 0.17
10 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.16, T:0.07
Consensus pattern (7 bp):
AAAAAGA
Found at i:65897 original size:46 final size:46
Alignment explanation
Indices: 65835--65967 Score: 139
Period size: 46 Copynumber: 2.9 Consensus size: 46
65825 AAGGAAAAAC
*
65835 GAAAAACGAAAGAATAAAAATGAGAAAAAGAAAAA-GAAGAAAAGAAA
1 GAAAAA-GAAAAAATAAAAATGAGAAAAAGAAAAATGAA-AAAAGAAA
* *
65882 -AAATGAGAAAAAATAAAAATGAGAAAAAATAAAAATGAAAAAAGAAA
1 GAAA-AAGAAAAAATAAAAATGAG-AAAAAGAAAAATGAAAAAAGAAA
* * *
65929 GAAAAATAAAAAGAGAAAAATGA-AAAAAGAGAAAT-AAAA
1 GAAAAAGAAAAA-ATAAAAATGAGAAAAAGAAAAATGAAAA
65968 TGAGGGTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
45 4 0.05
46 29 0.40
47 25 0.34
48 15 0.21
ACGTcount: A:0.76, C:0.01, G:0.16, T:0.08
Consensus pattern (46 bp):
GAAAAAGAAAAAATAAAAATGAGAAAAAGAAAAATGAAAAAAGAAA
Found at i:65907 original size:40 final size:38
Alignment explanation
Indices: 65823--65958 Score: 116
Period size: 40 Copynumber: 3.4 Consensus size: 38
65813 AAGAAGAAAT
* * *
65823 AAAAGGAAAAACGAAAAACGAAAGAATAAAAATGAGAAAA-AG
1 AAAAAGAAAAAAGAAAAAAGAAAG---AAAAAT-A-AAAAGAG
*
65865 AAAAAGAAGAAAAGAAAAAATGAGA-AAAAATAAAAATGAG
1 AAAAAGAA-AAAAGAAAAAA-GAAAGAAAAATAAAAA-GAG
65905 AAAAA-ATAAAAATGAAAAAAGAAAGAAAAATAAAAAGAG
1 AAAAAGA-AAAAA-GAAAAAAGAAAGAAAAATAAAAAGAG
65944 AAAAATGAAAAAAGA
1 AAAAA-GAAAAAAGA
65959 GAAATAAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
38 4 0.05
39 19 0.24
40 37 0.46
41 1 0.01
42 7 0.09
43 9 0.11
44 3 0.04
ACGTcount: A:0.76, C:0.01, G:0.16, T:0.07
Consensus pattern (38 bp):
AAAAAGAAAAAAGAAAAAAGAAAGAAAAATAAAAAGAG
Found at i:65924 original size:25 final size:22
Alignment explanation
Indices: 65850--65956 Score: 85
Period size: 24 Copynumber: 4.6 Consensus size: 22
65840 ACGAAAGAAT
* *
65850 AAAAATGAGAAAAAGAAAAAGA
1 AAAAATGAAAAAAATAAAAAGA
*
65872 AGAAAA-G-AAAAAATGAGAAAAAA
1 A-AAAATGAAAAAAAT-A-AAAAGA
65895 TAAAAATGAGAAAAAATAAAAATGA
1 -AAAAATGA-AAAAAATAAAAA-GA
65920 AAAAA-GAAAGAAAAATAAAAAGA
1 AAAAATG-AA-AAAAATAAAAAGA
65943 GAAAAATGAAAAAA
1 -AAAAATGAAAAAA
65957 GAGAAATAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
21 5 0.07
22 3 0.04
23 21 0.30
24 30 0.43
25 3 0.04
26 7 0.10
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (22 bp):
AAAAATGAAAAAAATAAAAAGA
Found at i:65959 original size:16 final size:16
Alignment explanation
Indices: 65850--65962 Score: 105
Period size: 16 Copynumber: 7.2 Consensus size: 16
65840 ACGAAAGAAT
*
65850 AAAAATGAGAAAA-AG
1 AAAAATGAAAAAAGAG
65865 AAAAA-GAAGAAAAGA-
1 AAAAATGAA-AAAAGAG
*
65880 AAAAATGAGAAAAA-AT
1 AAAAATGA-AAAAAGAG
*
65896 AAAAATGAGAAAAA-AT
1 AAAAATGA-AAAAAGAG
65912 AAAAATGAAAAAAGAAAG
1 AAAAATGAAAAAAG--AG
65930 AAAAAT--AAAAAGAG
1 AAAAATGAAAAAAGAG
65944 AAAAATGAAAAAAGAG
1 AAAAATGAAAAAAGAG
65960 AAA
1 AAA
65963 TAAAATGAGG
Statistics
Matches: 86, Mismatches: 2, Indels: 19
0.80 0.02 0.18
Matches are distributed among these distances:
14 10 0.12
15 20 0.23
16 48 0.56
17 1 0.01
18 7 0.08
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAATGAAAAAAGAG
Found at i:67155 original size:51 final size:51
Alignment explanation
Indices: 67094--67504 Score: 669
Period size: 51 Copynumber: 8.0 Consensus size: 51
67084 GAAGCAAATT
*
67094 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGTGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
67145 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
67196 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
67247 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
67298 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
* *
67349 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACT
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
* * *
67400 AGTTCGTTGAAGATTGAGTCCTATACTCCCTGAAAGAATAGGGAGCGGACC
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
* ** * * * *
67451 TGTTTATTGAAGATTTTCCGAGTTCTATACTCTCTGAAGGAGTAGAGAGCGGAC
1 AGTTCGTTGAAGA--TT--GAGTCCTATACTCTCTGAATGAATAGGGAGCGGAC
67505 CTGTTTTATT
Statistics
Matches: 342, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
51 310 0.91
53 2 0.01
55 30 0.09
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (51 bp):
AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
Found at i:67537 original size:56 final size:55
Alignment explanation
Indices: 67109--67551 Score: 240
Period size: 51 Copynumber: 8.5 Consensus size: 55
67099 GTTGAAGATT
* * * * ** **
67109 GAGTCCTATACTCTCTGAATGAATAGGGTGCGGACAAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
* * * ** **
67160 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
* * * ** **
67211 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
* * * ** **
67262 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
* * * ** **
67313 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
* * **
67364 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGA-CTAGTTCGTTGAAGA--TT--
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCT-GTTTATTGAAGATTTTCC
* * * *
67415 GAGTCCTATACTCCCTGAAAGAATAGGGAGCGGACCTGTTTATTGAAGATTTTCC
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
*
67470 GAGTTCTATACTCTCTGAAGGAGTAGAGAGCGGACCTGTTTTATTGAAGATTGTT-C
1 GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTG-TTTATTGAAGATT-TTCC
67526 GAG-TCTCATACT-TCCTGAAGGAATAG
1 GAGTTCT-ATACTCT-CTGAAGGAATAG
67552 GGAACAGACT
Statistics
Matches: 368, Mismatches: 14, Indels: 15
0.93 0.04 0.04
Matches are distributed among these distances:
51 292 0.79
52 2 0.01
53 2 0.01
55 37 0.10
56 33 0.09
57 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (55 bp):
GAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCTGTTTATTGAAGATTTTCC
Found at i:78175 original size:61 final size:60
Alignment explanation
Indices: 78101--78260 Score: 175
Period size: 60 Copynumber: 2.7 Consensus size: 60
78091 GTATATACGT
* ** *
78101 ATAGTTTGG-GATGAAATTGAAATTTTAAAAAAGTTTGGGGAGTAATTTAGAATG-AAGATC
1 ATAGTTTGGAGATGAAATTGAAATGTT-AAAAAGTTTGAAGAGTAATTTAGAAAGAAAG-TC
*
78161 ATAGTTTGGAGATGAAATTGAAATGTTCAAAAGTTTGAAGAGTAATTTAGAAAGAAAGTC
1 ATAGTTTGGAGATGAAATTGAAATGTTAAAAAGTTTGAAGAGTAATTTAGAAAGAAAGTC
* ** * *
78221 ATAGTCTAAAGATAAAATTGAAATAATT-AAAAGTTT-AAGA
1 ATAGTTTGGAGATGAAATTGAAAT-GTTAAAAAGTTTGAAGA
78261 ACTTATTTAA
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
59 4 0.05
60 62 0.71
61 21 0.24
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.31
Consensus pattern (60 bp):
ATAGTTTGGAGATGAAATTGAAATGTTAAAAAGTTTGAAGAGTAATTTAGAAAGAAAGTC
Found at i:79151 original size:29 final size:29
Alignment explanation
Indices: 79089--79222 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 29
79079 AACCCAACCA
* * **
79089 TAGGTCGCCAAGCACTCCAAGCGACCTAC
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
*
79118 AAGGTCGCCATGCACTCCCAGCGACCTTG
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
* * * *
79147 TAGGTCGCCAAGCAATCCCGGCGACCAAGATGG
1 TAGGTCGCCATGCACTCCCAGCGACC----TTG
* * *
79180 TAGGTCGCCATGTACGCCCAGCGACCTTA
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
79209 TAGGTCGCCATGCA
1 TAGGTCGCCATGCA
79223 TGCCGGCGTC
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 60 0.72
33 23 0.28
ACGTcount: A:0.24, C:0.34, G:0.25, T:0.16
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCCAGCGACCTTG
Found at i:79204 original size:62 final size:61
Alignment explanation
Indices: 79119--79235 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 61
79109 GCGACCTACA
* *
79119 AGGTCGCCATGCACTCCCAGCGACCTTGTAGGTCGCCAAGCAATCCCGGCGACCAAGATGGT
1 AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGC-ATCCCGGCGACCAAGATGGT
* * * *
79181 AGGTCGCCATGTACGCCCAGCGACCTTATAGGTCGCCATGCATGCCGGCGTCCAA
1 AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGCATCCCGGCGACCAA
79236 CGTTGGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 12 0.24
62 37 0.76
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.17
Consensus pattern (61 bp):
AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGCATCCCGGCGACCAAGATGGT
Found at i:80463 original size:42 final size:42
Alignment explanation
Indices: 80411--80498 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
80401 CATGCACAGC
*
80411 CATGCAGAGACTCCAACCTCGCCCAGACCCATGCCACGTTGA
1 CATGAAGAGACTCCAACCTCGCCCAGACCCATGCCACGTTGA
*
80453 CATGAAGAGACTCCAACCTCGCCCAGACCCATGCCACGTTGC
1 CATGAAGAGACTCCAACCTCGCCCAGACCCATGCCACGTTGA
80495 CATG
1 CATG
80499 CCGCCATGCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.26, C:0.40, G:0.19, T:0.15
Consensus pattern (42 bp):
CATGAAGAGACTCCAACCTCGCCCAGACCCATGCCACGTTGA
Found at i:80679 original size:10 final size:10
Alignment explanation
Indices: 80664--80692 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
80654 ATGGACTGCA
80664 TGGCGACCTT
1 TGGCGACCTT
80674 TGGCGACCTT
1 TGGCGACCTT
80684 TGGCGACCT
1 TGGCGACCT
80693 ACGTAGGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.31, G:0.31, T:0.28
Consensus pattern (10 bp):
TGGCGACCTT
Found at i:89908 original size:22 final size:24
Alignment explanation
Indices: 89865--89908 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
89855 TTGGTTAAGC
**
89865 AAATTAAGAGTCAAAATGCAAACA
1 AAATTAAGAGTCAAAAACCAAACA
89889 AAATT-AGA-TCAAAAACCAAA
1 AAATTAAGAGTCAAAAACCAAA
89909 TTAGAACGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 3 0.17
24 5 0.28
ACGTcount: A:0.61, C:0.14, G:0.09, T:0.16
Consensus pattern (24 bp):
AAATTAAGAGTCAAAAACCAAACA
Found at i:90162 original size:17 final size:17
Alignment explanation
Indices: 90148--90181 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
90138 AAAATAAATT
90148 TATT-ATTTTAATAAAA
1 TATTAATTTTAATAAAA
90164 TATTAATTTTAATTAAAA
1 TATTAATTTTAA-TAAAA
90182 GATAAACTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTAATTTTAATAAAA
Found at i:90596 original size:4 final size:4
Alignment explanation
Indices: 90587--90614 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
90577 ATGCCAAAGT
90587 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
90615 CATATCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:91186 original size:9 final size:9
Alignment explanation
Indices: 91158--91190 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
91148 ATATTATTCT
91158 TTAATTAAA
1 TTAATTAAA
*
91167 TT-ATAAAA
1 TTAATTAAA
91175 TTAATTAAA
1 TTAATTAAA
91184 TTAATTA
1 TTAATTA
91191 GCATAAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TTAATTAAA
Found at i:91440 original size:62 final size:62
Alignment explanation
Indices: 91343--91502 Score: 257
Period size: 62 Copynumber: 2.6 Consensus size: 62
91333 TATACATATG
* * * *
91343 TGATAGTACTATGGGTTTTTATTATTATTTTAATTATGATGCTTCTATCTTTTTATTAATAA
1 TGATAGCACTATGGGTTTTTATTATTATTTTAATTATAATGCTTCTACCTTTTCATTAATAA
**
91405 TGATAGCACTATTAGTTTTTATTATTATTTTAATTATAATGCTTCTACCTTTTCATTAATAA
1 TGATAGCACTATGGGTTTTTATTATTATTTTAATTATAATGCTTCTACCTTTTCATTAATAA
*
91467 TAATAGCACTATGGGTTTTTATTATTATTTTAATTA
1 TGATAGCACTATGGGTTTTTATTATTATTTTAATTA
91503 GTCATTATTT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.53
Consensus pattern (62 bp):
TGATAGCACTATGGGTTTTTATTATTATTTTAATTATAATGCTTCTACCTTTTCATTAATAA
Found at i:92743 original size:17 final size:17
Alignment explanation
Indices: 92721--92755 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
92711 GTTTGGGCCA
*
92721 TCTGGGCTTAAACCAGG
1 TCTGGGCCTAAACCAGG
*
92738 TCTGGGCCTAGACCAGG
1 TCTGGGCCTAAACCAGG
92755 T
1 T
92756 TGATCTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (17 bp):
TCTGGGCCTAAACCAGG
Found at i:92853 original size:3 final size:3
Alignment explanation
Indices: 92845--92888 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
92835 GTTTTATTTG
* *
92845 TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAG TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92889 ATATAATTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:93123 original size:42 final size:42
Alignment explanation
Indices: 93062--93166 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
93052 TTACAGATGG
* ** * * *
93062 CCCTAAGGACTTATTCATTTTGCTTGAAAGACTAATAAATGA
1 CCCTAAGGATTTAAACATTTGGCTCGAAAGACTAACAAATGA
* *
93104 CCCTAAGGATTTAAACATTTGGCTCGAAAGATTGACAAATGA
1 CCCTAAGGATTTAAACATTTGGCTCGAAAGACTAACAAATGA
*
93146 CCCGAAGGATTTACAA-ATTTG
1 CCCTAAGGATTTA-AACATTTG
93167 TGGGAAATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 51 0.96
43 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (42 bp):
CCCTAAGGATTTAAACATTTGGCTCGAAAGACTAACAAATGA
Found at i:93538 original size:249 final size:247
Alignment explanation
Indices: 93057--93984 Score: 1369
Period size: 249 Copynumber: 3.7 Consensus size: 247
93047 AGGTCTTACA
* * * * * *
93057 GATGGCCCTAAGGACTTATTCATTTTGCTTGAAAGACTAATAAATGACCCTAAGGATTTAAACAT
1 GATGGCCCTAAGGACTTA-TCATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGACAT
* * *
93122 -TTGGCTCGAAAGATTGACAAATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGG
65 CAT-GCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGG
* * * *
93186 TAAGAAACTTTTTACTTTTCAAAAATTTCATTTTCTAAAACATTAAATGAGAAATTTTGAAAATT
129 TAAGAAACTTCTTACTTTTCAAAAATTTCATTTT-TAGAACATTAAATGAGAAA-TTTAAAAATC
93251 GCTTTCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
192 GCTTTCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
* * * * * *
93307 GATGACCCTAAGGACTTGTCATCTGGCTCGAAAGGCTTATAGATGACCCGAAGGATTTA-AGCAT
1 GATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGA-CAT
* * *
93371 CATGCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTTTTGGAGATAATTTACTAGGT
65 CATGCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGGT
* *
93436 AAGAAACTTTTTACTTTTCAAAAATTGCATTTTATAGAACATTAAATGAGAAATTTCAAAAATCG
130 AAGAAACTTCTTACTTTTCAAAAATTTCATTTT-TAGAACATTAAATGAGAAATTT-AAAAATCG
* *
93501 CTTTCTCATTTTCATGTGAAAATCACATGTAAACATCCTACCCAAAGGTTTGACG
193 CTTTCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
* * *
93556 TATGGCCCTAAGGACTTATCATCTTGCTTGAAAGACTAACAGATGACTCGAAGGATTTAGACATC
1 GATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGACATC
* * * *
93621 ATGCTCTAAAGACTTACAGATGACCCGAAGAATTTACAAATTTGTGGGAAATAATTTACTGGGTA
66 ATGCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGGTA
*
93686 AGAAACTTCTTACTTTTCAAAAATTTCATTTTTTAGAACATTAAATGAGAAACTTAAAAATCGCT
131 AGAAACTTCTTACTTTTCAAAAATTTCA-TTTTTAGAACATTAAATGAGAAATTTAAAAATCGCT
93751 TTCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
195 TTCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
*
93804 GAT-GCCCTAAGGACTTATCATCTTGCTCGAAAGACTAACAGATGACCCGAATGATTTAGACATC
1 GATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGACATC
* * * *
93868 ATGCTCTAAAGACTTACAGATGACCCGAAGGATTTACAAATTTTTGGGAAATAATTTACTGGGTA
66 ATGCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGGTA
* *
93933 AGAAGCTTCTTAC-TTTCAAAAATTTCATTTTTAGAAAAGATTAAATGAGAAA
131 AGAAACTTCTTACTTTTCAAAAATTTCATTTTTAG--AACATTAAATGAGAAA
93985 CTTTGGAAAA
Statistics
Matches: 620, Mismatches: 51, Indels: 17
0.90 0.07 0.02
Matches are distributed among these distances:
245 7 0.01
246 14 0.02
247 148 0.24
248 67 0.11
249 362 0.58
250 22 0.04
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (247 bp):
GATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGACATC
ATGCTCGAAAGACTGACAGATGACCCGAAGGATTTACAAATTTGTGGGAAATAATTTACTAGGTA
AGAAACTTCTTACTTTTCAAAAATTTCATTTTTAGAACATTAAATGAGAAATTTAAAAATCGCTT
TCTCATTTTCATGCGAAAATCATATGTAAACATCCTACCCAAAGGTTTGACG
Found at i:93887 original size:42 final size:42
Alignment explanation
Indices: 93822--93903 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
93812 AAGGACTTAT
* *
93822 CATCTTGCTCGAAAGACTAACAGATGACCCGAATGATTTAGA
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGA
* *
93864 CATCATGCTCTAAAGACTTACAGATGACCCGAAGGATTTA
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTA
93904 CAAATTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAGA
Found at i:97089 original size:24 final size:23
Alignment explanation
Indices: 97053--97112 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
97043 CTTGATTCAA
*
97053 TTTTTTTTCTTC-TTTTCTTTTCT
1 TTTTTTTTTTTCTTTTTC-TTTCT
97076 TTTTTTCTTTTTCTTTTTCTTTCT
1 TTTTTT-TTTTTCTTTTTCTTTCT
97100 TTTCTTATTTTTT
1 TTT-TT-TTTTTT
97113 TATTTTTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 6 0.19
24 13 0.41
25 12 0.38
26 1 0.03
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTTTTTTCTTTTTCTTTCT
Found at i:97115 original size:8 final size:8
Alignment explanation
Indices: 97054--97120 Score: 52
Period size: 8 Copynumber: 8.8 Consensus size: 8
97044 TTGATTCAAT
97054 TTTTTTTC
1 TTTTTTTC
*
97062 TTCTTTTC
1 TTTTTTTC
97070 ---TTTTC
1 TTTTTTTC
97075 TTTTTTTC
1 TTTTTTTC
97083 TTTTTCTT-
1 TTTTT-TTC
*
97091 TTTCTTTC
1 TTTTTTTC
* *
97099 TTTTCTTA
1 TTTTTTTC
*
97107 TTTTTTTA
1 TTTTTTTC
97115 TTTTTT
1 TTTTTT
97121 GATGGATGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
5 5 0.10
7 2 0.04
8 39 0.81
9 2 0.04
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Done.