genome.fa.s3113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003113.1 Hibiscus syriacus cultivar Beakdansim tig00006510_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51412

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3940--3983	11	4.1	12	77	22	53	54	0	0	45	0.99
5366--5391	2	13.0	2	100	0	52	50	0	0	50	1.00
6312--6368	27	2.1	27	96	0	105	10	54	10	24	1.66
6520--6889	42	9.3	42	74	12	321	9	61	4	24	1.45
6490--6660	21	8.5	21	67	18	76	8	63	3	23	1.39
6496--6768	78	3.5	78	87	4	399	8	62	4	24	1.43
6688--6759	21	3.4	21	77	19	87	4	63	6	25	1.37
6710--6780	21	3.4	21	75	14	83	4	66	5	23	1.31
6606--6889	120	2.4	120	90	1	437	9	61	4	24	1.46
6725--6896	78	2.2	78	93	2	310	9	62	4	23	1.44
6753--6943	21	9.6	20	69	16	69	10	63	3	22	1.40
6875--6954	6	13.3	6	86	5	108	12	68	0	18	1.20
10675--10749	20	3.8	20	94	0	132	37	16	16	30	1.90
15500--15543	11	4.1	12	77	22	53	54	0	0	45	0.99
16450--16474	2	12.5	2	100	0	50	48	0	0	52	1.00
16945--16972	2	14.0	2	100	0	56	50	0	0	50	1.00
17893--17947	27	2.0	27	96	0	101	10	52	10	25	1.69
18078--18351	78	3.5	78	88	3	399	8	61	4	24	1.45
18181--18364	21	9.0	22	66	23	73	8	61	4	25	1.44
18110--18575	120	3.9	118	77	11	366	9	61	4	24	1.44
18308--18548	78	3.1	78	95	1	439	10	60	4	23	1.48
18336--18602	21	13.5	20	66	18	73	10	62	3	22	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18110--18549	42	11.1	41	73	14	359	9	60	4	24	1.47
18509--18602	18	5.1	18	81	12	100	12	67	1	19	1.29
18535--18602	6	11.3	6	84	6	84	11	69	0	19	1.19
22253--22347	20	4.8	20	96	0	163	37	17	14	29	1.90
22253--22363	40	2.8	40	89	5	147	36	18	14	30	1.91
24772--24834	2	31.5	2	100	0	126	49	0	0	50	1.00
25904--26104	108	1.9	108	97	0	384	46	13	11	28	1.78
27170--27234	29	2.2	29	97	0	121	47	0	0	52	1.00
27161--27235	29	2.7	27	84	8	96	49	0	1	49	1.09
28650--28693	11	4.1	12	77	22	53	54	0	0	45	0.99
29251--29303	23	2.3	23	83	9	63	54	13	20	11	1.69
29503--30087	305	1.9	301	92	2	985	37	12	11	38	1.80
30235--30392	21	7.8	20	72	7	86	38	25	17	18	1.92
30359--30568	20	10.5	20	80	6	201	37	25	17	20	1.94
31230--31284	24	2.3	24	83	0	65	27	14	20	38	1.91
31472--31496	12	2.1	12	100	0	50	72	0	28	0	0.86
33820--33917	19	5.4	19	84	13	143	14	22	17	45	1.84
33801--33917	53	2.2	53	98	1	227	13	23	17	44	1.85
34024--34060	14	2.6	14	91	0	65	45	21	0	32	1.52
35154--35211	27	2.1	27	96	0	107	10	53	10	25	1.66
35354--35412	21	2.9	22	78	19	65	6	62	5	25	1.41
35327--35760	77	5.6	77	75	11	411	10	61	4	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35375--35431	20	2.8	19	76	12	51	10	59	1	28	1.40
35508--35581	21	3.6	22	69	20	61	6	66	5	21	1.36
35516--35588	19	3.5	22	67	27	59	4	68	5	21	1.27
35643--35682	15	2.7	15	92	0	62	7	67	2	22	1.28
35638--35682	21	2.1	21	83	0	54	6	68	2	22	1.24
35481--35664	102	1.8	99	88	7	253	8	62	4	23	1.44
35708--35778	23	3.2	22	78	8	63	11	63	1	23	1.35
35739--35817	6	13.3	6	81	10	83	10	69	0	20	1.16
35751--35814	18	3.6	18	89	2	94	7	71	0	20	1.10
39538--39612	20	3.8	20	90	0	123	37	14	16	32	1.89
44320--44363	11	4.1	12	77	22	53	54	0	0	45	0.99
45733--45758	2	13.0	2	100	0	52	50	0	0	50	1.00
46670--46724	27	2.0	27	96	0	101	10	52	10	25	1.69
46827--46883	27	2.2	26	84	6	71	10	64	5	19	1.43
46885--47240	41	9.0	42	73	14	296	8	60	4	25	1.46
46855--47123	77	3.5	77	85	7	352	8	62	4	24	1.43
46955--47018	21	3.0	22	73	17	62	9	62	3	25	1.40
47045--47111	20	3.2	21	73	14	75	4	64	7	23	1.38
47044--47114	21	3.4	21	73	22	78	4	63	7	25	1.38
46962--47240	118	2.4	117	89	4	411	8	60	5	25	1.46
47066--47135	21	3.4	21	72	18	74	4	65	5	24	1.32
47081--47246	76	2.2	77	90	6	268	9	61	4	24	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47122--47246	35	3.4	36	73	11	128	11	60	4	24	1.47
47246--47300	6	9.3	6	88	9	78	12	69	0	18	1.19
47081--47273	76	2.6	73	84	11	205	9	62	4	23	1.42
48866--48936	34	2.0	33	81	13	79	36	4	7	52	1.48
50943--51017	20	3.8	20	94	0	132	37	16	16	30	1.90

Tables:   1

The End!