genome.fa.s3115.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003115.1 Hibiscus syriacus cultivar Beakdansim tig00006521_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55694

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3428--3471	11	4.1	12	77	22	53	54	0	0	45	0.99
4846--4877	2	16.0	2	100	0	64	50	0	0	50	1.00
5795--5851	27	2.1	27	96	0	105	10	54	10	24	1.66
6004--6413	42	10.5	42	70	16	319	8	61	4	24	1.45
5974--6145	21	8.5	21	68	16	85	8	63	3	24	1.39
5980--6253	78	3.5	78	88	3	408	8	62	4	24	1.43
6173--6244	21	3.4	21	77	19	87	4	63	6	25	1.37
6194--6261	21	3.2	21	70	15	59	4	67	5	22	1.30
6430--6490	6	10.3	6	82	10	72	11	68	0	19	1.19
6377--6487	21	5.3	21	73	14	86	10	65	1	21	1.33
6210--6446	77	3.1	78	92	5	391	10	61	5	23	1.47
10196--10269	20	4.0	19	83	11	91	31	17	14	36	1.90
14981--15024	11	4.1	12	77	22	53	54	0	0	45	0.99
16418--16455	2	19.0	2	100	0	76	50	0	0	50	1.00
17374--17430	27	2.1	27	96	0	105	10	54	10	24	1.66
17552--18038	21	24.5	20	64	19	98	9	62	4	24	1.45
17589--17998	198	2.1	198	94	1	725	8	61	4	24	1.45
17558--17830	78	3.5	78	88	3	399	8	61	4	24	1.44
17787--18028	78	3.1	78	97	0	457	10	61	4	23	1.47
17667--17950	120	2.4	120	91	1	444	9	61	4	24	1.46
17589--18029	42	11.1	42	72	13	281	9	61	4	24	1.46
17558--18029	120	4.0	119	78	10	382	9	61	4	24	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17929--18076	18	7.9	18	70	21	72	11	64	2	20	1.38
18015--18076	6	10.3	6	82	6	72	11	69	0	19	1.18
17935--18067	21	6.7	20	68	15	71	10	65	3	21	1.37
21706--21780	20	3.8	20	94	0	132	38	17	14	29	1.89
21705--21796	20	4.6	20	88	6	102	35	18	14	31	1.90
21687--21796	40	2.8	39	84	6	150	35	17	13	33	1.89
26443--26486	11	4.1	12	77	22	53	54	0	0	45	0.99
27361--27385	2	12.5	2	100	0	50	48	0	0	52	1.00
27844--27885	2	21.0	2	100	0	84	50	0	0	50	1.00
28791--28847	27	2.1	27	96	0	105	10	54	10	24	1.66
28969--29258	21	14.5	20	64	20	83	8	62	4	24	1.42
29006--29410	42	10.2	42	73	13	376	8	61	4	24	1.45
28975--29246	77	3.5	78	87	4	390	8	62	4	24	1.44
29084--29366	120	2.4	120	90	1	435	9	61	4	24	1.46
29203--29443	78	3.1	78	96	0	448	10	61	4	23	1.48
29231--29474	21	12.6	20	66	16	86	10	62	4	22	1.44
29430--29491	6	10.3	6	82	6	72	11	69	0	19	1.18
29428--29491	18	3.6	18	85	8	85	10	70	0	18	1.16
35997--36040	11	4.1	12	77	22	53	54	0	0	45	0.99
36938--37016	2	39.5	2	100	0	158	49	0	0	50	1.00
37485--37530	2	23.0	2	100	0	92	50	0	0	50	1.00
37552--37582	16	1.9	16	93	0	53	29	6	6	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38464--38520	27	2.1	27	96	0	105	10	54	10	24	1.66
38680--39041	42	9.1	42	75	13	325	9	61	4	25	1.46
38750--38933	21	9.0	22	66	23	73	8	61	4	25	1.44
38648--38920	78	3.5	78	88	3	399	8	61	4	24	1.44
38877--39048	78	2.2	78	93	2	310	9	62	4	23	1.44
38905--39095	21	9.6	20	69	16	69	10	63	3	22	1.40
38757--39041	120	2.4	120	91	1	446	9	61	4	24	1.46
39027--39106	6	13.3	6	86	5	108	12	68	0	18	1.20
42823--42897	20	3.8	20	94	0	132	37	16	16	30	1.90
47628--47671	11	4.1	12	77	22	53	54	0	0	45	0.99
48577--48601	2	12.5	2	100	0	50	48	0	0	52	1.00
49071--49116	2	23.0	2	100	0	92	50	0	0	50	1.00
50030--50081	26	2.0	26	96	0	95	11	51	11	25	1.71
50214--50487	78	3.5	78	88	3	399	8	61	4	24	1.45
50246--50693	120	3.8	118	79	8	380	9	61	4	24	1.45
50246--50719	198	2.4	198	90	3	726	9	62	4	24	1.44
50214--50693	156	3.1	156	83	5	519	9	61	4	24	1.46
50444--50685	78	3.1	78	97	0	457	10	61	4	23	1.47
50246--50686	42	11.1	42	72	13	281	9	61	4	24	1.46
50314--50724	21	20.6	21	66	15	102	9	62	4	23	1.44
50697--50735	15	2.4	17	91	8	64	12	74	0	12	1.08
50672--50735	6	11.3	6	77	15	57	10	71	0	17	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50684--50735	17	3.1	16	83	13	61	9	75	0	15	1.05
54361--54454	20	4.8	20	94	2	163	38	17	15	28	1.90
54361--54454	39	2.4	40	94	1	163	38	17	15	28	1.90
54360--54470	20	5.6	20	89	7	126	36	18	15	30	1.91

Tables:   1

The End!