Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003116.1 Hibiscus syriacus cultivar Beakdansim tig00006523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107654

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2376--2420
18
2.6
18
92
3
74
17
22
15
44
1.86
16052--16196
5
28.0
5
72
22
65
78
0
16
4
0.91
16055--16235
23
7.7
22
70
20
109
77
0
18
4
0.93
16053--16191
40
3.5
39
80
9
133
79
0
15
5
0.91
16125--16253
41
3.1
40
80
14
129
76
0
17
6
0.98
16032--16248
92
2.3
94
79
17
236
76
0
17
6
1.00
16164--16233
7
10.3
7
78
14
58
74
0
22
2
0.95
16095--16262
66
2.7
60
72
17
76
77
0
16
5
0.96
16085--16262
16
10.5
16
68
15
65
78
0
15
6
0.95
17628--17941
55
5.7
54
88
5
343
27
18
24
29
1.98
17631--17940
111
2.8
110
83
7
362
27
18
24
29
1.98
23335--23403
30
2.3
30
97
0
129
47
24
10
17
1.78
30510--30541
15
2.1
15
94
0
55
3
53
0
43
1.16
34383--34421
12
3.2
12
85
0
51
48
5
43
2
1.38
34391--34427
12
3.2
12
81
14
51
51
2
40
5
1.39
38663--38730
2
34.5
2
91
2
111
50
2
0
47
1.16
40776--40803
7
4.0
7
100
0
56
0
57
0
42
0.99
43538--43607
31
2.3
31
79
0
77
37
12
21
28
1.90
44593--44648
26
2.2
25
81
12
69
46
14
5
33
1.67
45563--45632
21
3.3
21
73
13
63
42
5
7
44
1.55
45664--45742
32
2.5
31
81
2
86
41
2
7
48
1.45
63672--63772
49
2.0
50
98
1
195
46
3
9
39
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64577--64647
21
3.4
21
72
14
65
39
21
16
22
1.92
64574--64667
42
2.2
42
90
3
145
38
22
15
23
1.93
64752--64823
20
3.5
20
90
1
108
20
22
25
31
1.98
70641--70707
30
2.2
31
84
5
84
23
7
5
62
1.44
71165--71193
2
14.5
2
100
0
58
51
0
0
48
1.00
77405--77438
16
2.1
16
94
0
59
58
0
14
26
1.36
79205--79246
21
2.0
21
90
0
66
38
23
7
30
1.82
81776--81866
20
4.5
20
79
2
92
40
17
18
23
1.91
81860--81907
21
2.3
21
89
3
71
43
27
8
20
1.80
81891--82093
40
4.9
40
74
12
169
25
25
18
31
1.98
81916--82093
20
8.6
20
75
13
137
24
25
19
30
1.98
81929--81980
27
2.0
27
92
3
88
25
28
17
28
1.97
82112--82160
20
2.5
20
82
0
71
34
16
24
24
1.95
82196--82237
20
2.1
20
95
0
75
30
26
19
23
1.98
82288--82375
20
4.4
20
95
0
149
31
15
27
25
1.96
82461--82500
21
1.9
21
89
0
62
25
15
27
32
1.95
82695--82736
21
2.0
21
90
0
66
35
23
9
30
1.87
84720--84772
20
2.7
20
82
8
72
16
18
1
62
1.42
102459--102522
28
2.6
25
75
20
62
62
3
21
12
1.43
103307--103360
28
1.9
28
85
7
74
68
3
12
14
1.34
106000--106069
28
2.5
27
83
4
86
47
17
10
25
1.78
106071--106100
13
2.3
13
100
0
60
13
23
46
16
1.82

Tables:   1

The End!