genome.fa.s3117.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003117.1 Hibiscus syriacus cultivar Beakdansim tig00006524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73048

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15323--15364	20	2.1	20	86	0	57	30	26	9	33	1.88
15361--15447	21	4.2	21	76	14	92	27	22	14	34	1.94
15473--15558	20	4.3	20	72	8	68	34	22	9	33	1.86
15370--15556	40	4.7	40	73	8	132	29	23	12	34	1.91
15714--15752	16	2.5	15	84	8	51	28	5	0	66	1.12
16496--16549	24	2.2	24	90	0	81	20	16	20	42	1.89
16725--16760	9	4.1	9	85	7	56	77	0	22	0	0.76
18802--18865	6	10.7	6	80	6	76	60	18	3	17	1.48
18802--18871	18	3.9	18	94	0	113	60	18	4	17	1.52
19161--19255	49	1.9	49	86	0	136	26	22	18	32	1.97
19220--19265	20	2.3	20	80	0	56	23	15	19	41	1.89
20775--20949	21	8.3	21	83	2	181	26	16	36	21	1.93
21295--21340	21	2.2	21	84	7	58	34	36	13	15	1.86
21266--21411	63	2.3	64	79	2	170	32	35	13	18	1.89
21246--21340	42	2.3	42	79	3	111	32	34	12	20	1.90
21357--21427	21	3.4	21	88	0	97	35	33	12	18	1.89
21542--21640	42	2.4	42	92	0	162	17	20	34	28	1.95
23813--23859	20	2.4	19	82	10	58	25	12	29	31	1.93
23825--23866	20	2.1	20	90	0	66	30	9	30	28	1.89
25032--25272	41	5.8	41	72	12	179	30	17	22	29	1.97
25094--25311	41	5.3	41	69	15	146	31	17	22	28	1.97
25038--25311	83	3.3	81	84	3	309	31	17	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25094--25294	82	2.4	82	85	2	269	29	17	22	30	1.97
28547--28575	10	2.7	11	89	10	51	27	58	6	6	1.50
29176--29210	18	1.9	18	100	0	70	25	34	22	17	1.96
29838--29909	19	3.8	19	96	0	126	23	29	16	30	1.96
42913--42999	45	2.0	45	84	11	117	28	26	16	28	1.97
43001--43052	24	2.2	24	100	0	104	44	21	11	23	1.84
43047--43202	43	3.6	43	78	5	136	28	21	19	30	1.97
43733--43992	94	2.7	94	89	1	385	31	19	16	32	1.94
72508--72592	21	4.1	21	89	1	127	12	30	32	23	1.92

Tables:   1

The End!