Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003118.1 Hibiscus syriacus cultivar Beakdansim tig00006530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86799

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3048--3120
36
2.1
36
92
2
121
31
5
17
45
1.72
7534--7563
14
2.1
14
93
0
51
50
6
0
43
1.28
7643--7830
7
26.9
7
73
10
143
18
1
29
50
1.57
9454--9484
16
1.9
16
93
0
53
38
16
16
29
1.90
9864--9896
17
1.9
17
100
0
66
27
18
24
30
1.98
9881--9991
35
3.1
35
92
2
168
22
17
27
32
1.96
9919--9971
11
4.6
11
72
9
52
24
18
26
30
1.98
9855--9982
23
5.7
23
65
16
63
23
17
28
30
1.97
15881--15947
29
2.3
30
78
2
82
38
5
16
38
1.73
18037--18076
21
1.9
21
90
10
64
12
30
32
25
1.92
18651--18682
16
2.0
16
100
0
64
31
6
25
37
1.81
26237--26275
18
2.2
17
86
13
53
56
0
2
41
1.13
52521--52640
42
2.9
42
96
0
213
17
20
18
44
1.87
52829--52869
18
2.4
17
87
4
55
51
0
0
48
1.00
52833--52887
21
2.7
20
79
17
60
47
0
0
52
1.00
52839--52948
29
3.7
29
74
20
95
47
0
0
50
1.13
52829--52943
50
2.3
51
80
15
127
47
0
0
50
1.13
52929--52969
21
2.0
21
85
4
57
43
0
0
56
0.99
52851--52967
50
2.3
49
80
11
130
45
0
0
52
1.12
53167--53236
20
3.5
20
96
0
131
35
14
10
40
1.79
53167--53245
40
2.0
40
89
0
122
35
15
8
40
1.78
53219--53300
15
5.5
15
85
2
112
35
18
7
39
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53219--53300
30
2.8
30
90
1
130
35
18
7
39
1.78
53219--53304
45
1.9
44
92
2
145
33
17
6
41
1.76
53546--53662
42
2.8
42
96
0
216
14
20
18
46
1.84
53837--53916
22
3.3
23
79
13
63
51
0
0
48
1.00
53846--53905
21
3.0
20
81
11
61
46
0
0
53
1.00
53872--53910
13
2.9
13
84
3
51
43
0
0
56
0.99
53870--53910
18
2.2
20
86
8
59
43
0
0
56
0.99
53872--53971
28
3.5
28
77
15
89
48
1
1
50
1.14
54189--54258
20
3.5
20
94
0
122
37
14
8
40
1.76
54242--54312
30
2.4
30
90
2
117
32
16
5
45
1.71
54242--54312
15
4.8
15
75
3
81
32
16
5
45
1.71
54262--54325
30
2.2
30
82
2
76
35
17
7
39
1.78
59501--59560
26
2.3
26
88
0
84
40
31
10
18
1.84
60845--60879
16
2.2
16
90
10
54
22
0
8
68
1.16
63267--63312
18
2.6
18
86
6
58
52
4
4
39
1.41
69217--69262
20
2.2
21
96
3
85
54
4
4
36
1.40
69670--69847
88
2.0
88
79
6
191
29
15
7
47
1.73
71450--71495
18
2.6
18
89
6
67
52
6
4
36
1.47
73257--73291
2
17.5
2
100
0
70
51
0
0
48
1.00
79641--79688
21
2.3
21
85
7
62
37
4
2
56
1.30

Tables:   1

The End!