Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003119.1 Hibiscus syriacus cultivar Beakdansim tig00006533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58093

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2737--2810
19
4.0
19
67
13
55
48
2
0
48
1.15
7447--7471
13
1.9
13
100
0
50
48
0
0
52
1.00
7388--7766
186
2.0
186
94
1
661
41
4
8
45
1.53
9674--9700
14
1.9
14
100
0
54
29
40
22
7
1.81
10074--10157
9
8.6
9
75
14
69
61
0
2
35
1.09
10064--10161
29
3.3
29
86
8
142
60
0
2
37
1.09
10475--10508
2
17.0
2
100
0
68
50
0
0
50
1.00
10640--10673
16
2.2
16
89
5
52
67
5
0
26
1.13
13833--13893
30
2.0
30
93
0
104
27
19
22
29
1.98
13962--14015
22
2.5
22
96
0
99
20
24
14
40
1.90
22421--22489
13
5.2
13
75
20
72
65
1
0
33
1.02
26299--26414
50
2.3
50
98
0
223
37
25
17
20
1.94
29069--29160
31
3.0
31
92
4
143
33
18
22
25
1.97
29080--29165
31
2.8
31
94
3
147
36
16
22
25
1.94
32364--32397
17
1.9
18
94
5
61
32
5
2
58
1.37
32460--32679
111
2.0
111
92
0
368
37
7
10
44
1.68
33919--34020
49
2.1
48
83
7
125
23
30
30
15
1.95
34039--34113
29
2.6
29
89
4
107
42
12
16
29
1.83
36994--37037
16
2.8
16
96
0
79
29
27
0
43
1.55
38763--38804
22
1.9
22
90
0
66
83
0
14
2
0.75
38758--38804
12
4.0
12
81
13
53
80
0
17
2
0.80
48259--48286
14
2.0
14
100
0
56
57
21
14
7
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48349--48408
10
5.7
10
70
18
50
58
18
11
11
1.63
48353--48402
16
3.1
16
85
2
73
58
20
12
10
1.62
49135--49195
10
5.4
10
74
24
50
54
22
11
11
1.68
49142--49196
14
4.3
13
80
17
62
52
23
12
10
1.71
49122--49195
24
3.1
24
88
5
98
55
20
10
13
1.68
49846--50162
22
14.6
22
87
5
466
38
0
11
49
1.39
50186--50244
31
1.9
31
89
0
91
45
8
3
42
1.51
57433--57499
32
2.1
32
97
2
127
20
25
13
40
1.89

Tables:   1

The End!