genome.fa.s312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000312.1 Hibiscus syriacus cultivar Beakdansim tig00000588_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40113

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926--970	23	2.0	22	82	4	54	51	6	0	42	1.28
1483--1542	20	2.9	20	79	13	59	45	1	0	53	1.10
1499--1542	20	2.1	20	87	8	61	43	2	0	54	1.12
1501--1603	23	3.8	28	72	20	92	46	1	0	50	1.19
1837--1880	19	2.3	20	80	11	56	54	0	0	45	0.99
2670--2851	29	6.4	28	72	8	129	35	6	2	55	1.38
2672--2874	57	3.6	56	78	11	236	36	7	1	54	1.40
2670--2874	112	1.8	114	93	2	360	36	7	1	54	1.40
2672--2848	55	3.2	55	79	12	234	35	6	2	55	1.39
2670--2897	112	2.1	110	87	5	325	39	6	2	51	1.40
3114--3206	47	2.0	47	87	4	134	40	20	15	23	1.90
3480--3520	21	2.0	21	85	4	57	29	14	14	41	1.86
4440--4520	42	1.9	42	87	0	117	19	8	19	51	1.72
4436--4530	42	2.3	42	78	8	113	17	11	20	50	1.77
4753--4809	27	2.1	27	84	12	73	49	1	0	49	1.11
4964--5005	21	2.0	21	86	9	59	54	2	0	42	1.13
8085--8337	83	3.1	82	86	3	224	32	20	16	30	1.94
8108--8508	82	4.8	83	84	6	424	27	21	18	32	1.96
8127--8508	42	9.2	42	83	7	433	28	21	18	31	1.97
8127--8508	124	3.1	125	89	2	538	28	21	18	31	1.97
12475--12756	43	6.6	43	81	9	260	21	22	23	32	1.98
12475--12756	128	2.2	129	85	5	374	21	22	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18557--18582	4	6.5	4	100	0	52	23	0	0	76	0.78
19706--20088	43	8.9	42	77	8	333	27	14	23	34	1.93
19706--20088	128	3.0	129	83	3	450	27	14	23	34	1.93
20517--20569	21	2.5	21	76	11	72	0	37	20	41	1.53
28661--28988	41	7.9	41	81	4	338	34	19	17	28	1.95
28663--28971	166	1.9	166	84	2	424	35	19	18	26	1.94
30244--30417	41	4.2	42	82	6	203	31	17	14	35	1.91
30258--30418	82	2.0	82	87	2	234	31	17	14	36	1.90
30444--30602	42	3.9	41	68	21	107	29	21	14	34	1.93
30455--30618	82	2.0	81	81	10	192	30	20	14	35	1.92
30789--32813	8	254.4	8	96	0	3134	24	2	25	47	1.66
31295--31409	2	57.5	2	94	0	203	2	0	46	50	1.15
33092--33182	39	2.3	39	77	3	94	21	19	19	38	1.94
33489--33542	20	2.7	20	91	0	81	33	31	9	25	1.88
33506--33549	20	2.2	20	91	0	70	31	25	11	31	1.91
33492--33622	40	3.3	39	72	4	109	30	22	12	35	1.90
33779--33816	16	2.5	15	88	12	60	28	2	0	68	1.03
34558--34611	24	2.2	24	87	6	74	22	16	18	42	1.89
34786--34819	3	11.3	3	100	0	68	64	0	35	0	0.94
37484--37958	182	2.6	182	86	2	661	40	14	16	28	1.87

Tables:   1

The End!