Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003120.1 Hibiscus syriacus cultivar Beakdansim tig00006534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70308
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:233 original size:22 final size:21
Alignment explanation
Indices: 182--236 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
172 ATCTAATTTT
*
182 GGTATCAATA--CTGGTAGGG
1 GGTATCAATACCCTGATAGGG
201 GGTATCAATACCCTGATAGGG
1 GGTATCAATACCCTGATAGGG
*
222 TGGTATCGATACCCT
1 -GGTATCAATACCCT
237 AGTAAGGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 10 0.32
21 8 0.26
22 13 0.42
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (21 bp):
GGTATCAATACCCTGATAGGG
Found at i:1310 original size:65 final size:68
Alignment explanation
Indices: 1138--1517 Score: 535
Period size: 66 Copynumber: 5.7 Consensus size: 68
1128 GATCAAACGA
* * * * *
1138 CCTAATTGTGCATATGACATAAATGTGTCATTTATGCTAGTTAGATGAAAGACTAATTGTCTTTG
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
1203 AGG
66 AGG
* *
1206 CCTAACTGTGC--ATGACAGAAAGGTATCATTTATGCCAGTTAGAT-AAAGAATAAGTGTCTTTG
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
1268 AGG
66 AGG
* *
1271 CCTAA-TGTGCATATGATAGAAAGATGTCATTTATG-CAGTTAGATGAAAGACTAAGTGTCTTT-
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
**
1333 AAT
66 AGG
*
1336 CCTAACTGTGCATATGACA-AAATG-GTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
1399 AGG
66 AGG
* * **
1402 CTTAACTGTGCATATGAC-GAAAGGTGTCATTTATGTCAGTTAGATGAAAGACTAAGCATCTTTG
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
1466 AGG
66 AGG
**
1469 CCTAACTGTGCATATGACAGAAAGGTGTCAACTATGCCAGTTAGATGAA
1 CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
1518 CGATTAGTAC
Statistics
Matches: 276, Mismatches: 27, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
64 15 0.05
65 69 0.25
66 99 0.36
67 56 0.20
68 37 0.13
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (68 bp):
CCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTCTTTG
AGG
Found at i:1640 original size:77 final size:76
Alignment explanation
Indices: 1468--1701 Score: 283
Period size: 80 Copynumber: 3.0 Consensus size: 76
1458 CATCTTTGAG
* *
1468 GCCTAACTGTGC-ATATGACAGAAAGGTGTCAACTATGCCAGTTAGATGAACGATTAGTACCGTT
1 GCCTAACTGTGCAAT-TGACA-AAAAGTGTCAACTATGCCAGTTAGATGAACG-GT--TACCGTT
*
1532 GAGAAAAAGAATAATA
61 GAGTAAAAGAATAATA
*
1548 GCCTAACTGTGCAATTGGCAAAAAGCTGTCAACTATGCCAGTTAGATGAACGGTTACCGTTGAGT
1 GCCTAACTGTGCAATTGACAAAAAG-TGTCAACTATGCCAGTTAGATGAACGGTTACCGTTGAGT
1613 AAAAGAATAATA
65 AAAAGAATAATA
* * * **
1625 GCCTAATTGTGCAATTGACAGAAAGTGTCAATTATGTTAGTTAGATGAACGGTTAAACACTGTTG
1 GCCTAACTGTGCAATTGACAAAAAGTGTCAACTATGCCAGTTAGATGAACGGTT--AC-C-GTTG
1690 AGT-AAAGAATAA
62 AGTAAAAGAATAA
1702 AGGAATTTTA
Statistics
Matches: 138, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
76 26 0.19
77 44 0.32
78 2 0.01
79 15 0.11
80 49 0.36
81 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (76 bp):
GCCTAACTGTGCAATTGACAAAAAGTGTCAACTATGCCAGTTAGATGAACGGTTACCGTTGAGTA
AAAGAATAATA
Found at i:4790 original size:129 final size:130
Alignment explanation
Indices: 4553--4792 Score: 315
Period size: 129 Copynumber: 1.9 Consensus size: 130
4543 TACAGTCCAA
*** * * *
4553 ACACTTAAAAGTATAACGTTGAAAATGTTAGACATATATTTTTAGCAAAAAATTCTTTAGGCACC
1 ACACTTAAAAGTATAACAAAGAAAACGTTAGACATATATTTTTAACAAAAAATTCTTTAAGCACC
* * * *
4618 AAAAATAATTTTGAGGTATAGTTTAGACACCTAAAAGTGTATTAAGGCTTAAAAAATAGCAGTAT
66 AAAAATAATTTTAAGATATAGTTTAGACACCTAAAAATATATTAAGGCTTAAAAAATAGCAGTAT
*
4683 ACACTTAAAAGTATAACAAAGAAAACGTTAGACACT-TATTTTTAAC-GAAAATTCTTTAAGCAC
1 ACACTTAAAAGTATAACAAAGAAAACGTTAGACA-TATATTTTTAACAAAAAATTCTTTAAGCAC
* **
4746 CAAAAGTCAA-TTTAAGATATAGTTTAGGTACCTAAAAATATATTAAG
65 CAAAAAT-AATTTTAAGATATAGTTTAGACACCTAAAAATATATTAAG
4793 CTTTTTCTAA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
129 52 0.55
130 41 0.44
131 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.31
Consensus pattern (130 bp):
ACACTTAAAAGTATAACAAAGAAAACGTTAGACATATATTTTTAACAAAAAATTCTTTAAGCACC
AAAAATAATTTTAAGATATAGTTTAGACACCTAAAAATATATTAAGGCTTAAAAAATAGCAGTAT
Found at i:5108 original size:21 final size:20
Alignment explanation
Indices: 5084--5122 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
5074 AATAATACTT
5084 ATTTTAAAATTTATTAAATAA
1 ATTTTAAAATTTA-TAAATAA
**
5105 ATTTTTTAATTTATAAAT
1 ATTTTAAAATTTATAAAT
5123 GTATCACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTAAAATTTATAAATAA
Found at i:6031 original size:92 final size:92
Alignment explanation
Indices: 5874--6052 Score: 286
Period size: 92 Copynumber: 1.9 Consensus size: 92
5864 CCATGCGTGC
* ** *
5874 TCTTGAGTTCTAGTGATCAGCACGAAGGCTATCAATGTCTAGCACTTGATGGTAAGGTTTATATT
1 TCTTGAGTTATAGTGATCAGCAAAAAGGCTATCAATGTCTAGCACCTGATGGTAAGGTTTATATT
*
5939 TGTGTTGAAACGATTTTTTCTTTATGT
66 TCTGTTGAAACGATTTTTTCTTTATGT
* *
5966 TCTTGGGTTATAGTGCTCAGCAAAAAGGCTATCAATGTCTAGCACCTGATGGTAAGGTTTATATT
1 TCTTGAGTTATAGTGATCAGCAAAAAGGCTATCAATGTCTAGCACCTGATGGTAAGGTTTATATT
*
6031 TCTGTTGAAACTATTTTTTCTT
66 TCTGTTGAAACGATTTTTTCTT
6053 AAAGTGAGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 79 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (92 bp):
TCTTGAGTTATAGTGATCAGCAAAAAGGCTATCAATGTCTAGCACCTGATGGTAAGGTTTATATT
TCTGTTGAAACGATTTTTTCTTTATGT
Found at i:6136 original size:21 final size:22
Alignment explanation
Indices: 6102--6145 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
6092 TTTGAATTAA
6102 TTTTTAATTAAAAAAATAAATG
1 TTTTTAATTAAAAAAATAAATG
6124 TTTTTAATT-AAAAAATAAATG
1 TTTTTAATTAAAAAAATAAATG
6145 T
1 T
6146 GATTTAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (22 bp):
TTTTTAATTAAAAAAATAAATG
Found at i:6151 original size:22 final size:22
Alignment explanation
Indices: 6104--6152 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 22
6094 TGAATTAATT
*
6104 TTTAATTAAAAAAATAAATGTT
1 TTTAATTAAAAAAATAAATGTA
6126 TTTAATT-AAAAAATAAATGTGA
1 TTTAATTAAAAAAATAAATGT-A
6148 TTTAA
1 TTTAA
6153 AACCTCTCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (22 bp):
TTTAATTAAAAAAATAAATGTA
Found at i:8236 original size:22 final size:22
Alignment explanation
Indices: 8210--8251 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8200 TCACAATTAT
8210 TTAAAAAAATTAAATAAAAATA
1 TTAAAAAAATTAAATAAAAATA
** *
8232 TTAAAATTATTTAATAAAAA
1 TTAAAAAAATTAAATAAAAA
8252 ATAATATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAAAAAAATTAAATAAAAATA
Found at i:8926 original size:24 final size:24
Alignment explanation
Indices: 8894--8953 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
8884 CAACCGGTCT
*
8894 GGTTCACTAGTAGCGGTTCTGACC
1 GGTTCACTAATAGCGGTTCTGACC
8918 GGTTCACTAATAGCGGTTCTGACC
1 GGTTCACTAATAGCGGTTCTGACC
8942 GGTTCACTAATA
1 GGTTCACTAATA
8954 ACGATTCAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (24 bp):
GGTTCACTAATAGCGGTTCTGACC
Found at i:14856 original size:21 final size:21
Alignment explanation
Indices: 14836--14922 Score: 138
Period size: 21 Copynumber: 4.1 Consensus size: 21
14826 CCATACCAAG
*
14836 GACGAGAAGACCATTCACAAG
1 GACGAGAAGACCATTCACAAA
* *
14857 GATGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCACAAA
*
14878 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCACAAA
14899 GACGAGAAGACCATTCACAAA
1 GACGAGAAGACCATTCACAAA
14920 GAC
1 GAC
14923 ATAAAGACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.13
Consensus pattern (21 bp):
GACGAGAAGACCATTCACAAA
Found at i:15181 original size:6 final size:6
Alignment explanation
Indices: 15170--15237 Score: 102
Period size: 6 Copynumber: 11.2 Consensus size: 6
15160 ATTAACACCT
*
15170 TTTGCA TTTGCA TTTGGAA TTTGCA TTTGGCA TTTGCA TTTGCA TTTGCA
1 TTTGCA TTTGCA TTT-GCA TTTGCA TTT-GCA TTTGCA TTTGCA TTTGCA
15220 TTTGCA TTTGCA -TTGCA T
1 TTTGCA TTTGCA TTTGCA T
15238 GTATGTATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
5 5 0.09
6 41 0.72
7 11 0.19
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.49
Consensus pattern (6 bp):
TTTGCA
Found at i:19754 original size:37 final size:37
Alignment explanation
Indices: 19713--20171 Score: 184
Period size: 36 Copynumber: 12.4 Consensus size: 37
19703 CCTCCGGGCC
*
19713 ATCTTAATCCTTCACTAAAGAGTAGTGAAGCAAATCA
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
*
19750 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTC-
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAA-TCA
* * * **** *
19787 ATCAGTAAGCCTTC-CGAAA-A-TGATGATTAAGTTCTCCGGGCC
1 ATC-TTAAGCCTTCACTAAAGAGT-A-G-TGAAG----CAAATCA
** *
19829 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATAA
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
* *
19866 ATCTTAAGCCTTCATTGAAGAGTAGTGAAGCAAATTC-
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAA-TCA
* * * **** *
19903 ATCAGTAAGCCTTCCGAC-AATGA-T-GATTAAGTCCTCCGGGCC
1 ATC-TTAAGCCTT-C-ACTAAAGAGTAG-TGAAG----CAAATCA
* *
19945 ATCTTAAGCCTTCACTGAAA-AGTAGTAAAGCAAATCC
1 ATCTTAAGCCTTCACT-AAAGAGTAGTGAAGCAAATCA
*
19982 ATCTTAAGCCTT--C---A-AGTAGTGAAGCAAATCC
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
* * ** *
20013 ATCTTAAGTCTTCACTGAAGAGTAGTGAAG-TGATCT
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
* * * *
20049 ATCATAAGCCTTCACCT-GAGAGTAGTGAAG-TAATCC
1 ATCTTAAGCCTTCA-CTAAAGAGTAGTGAAGCAAATCA
*** *
20085 ATCTTAAGCCTTCACCGGAGAGTAGTGAAGCAAA-CC
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
* * ** * *
20121 ATTTTAAGCCTTTACTGGAGAGTAGTGAAGTAAA-CC
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
*
20157 ATCTTAAACCTTCAC
1 ATCTTAAGCCTTCAC
20172 CGAAGAAATA
Statistics
Matches: 327, Mismatches: 59, Indels: 73
0.71 0.13 0.16
Matches are distributed among these distances:
31 28 0.09
33 1 0.00
35 3 0.01
36 106 0.32
37 105 0.32
38 29 0.09
39 6 0.02
40 3 0.01
41 30 0.09
42 13 0.04
43 2 0.01
44 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (37 bp):
ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAATCA
Found at i:19829 original size:116 final size:116
Alignment explanation
Indices: 19625--19995 Score: 627
Period size: 116 Copynumber: 3.2 Consensus size: 116
19615 ATGAGACTGG
* *
19625 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGGAAGCCTTCCGATA
1 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGAAA
*
19690 ATGATGATTAAGTCCTCCGGGCCATCTTAATCCTTCACTAAAGAGTAGTGA
66 ATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTAAAGAGTAGTGA
19741 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGAAA
1 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGAAA
* **
19806 ATGATGATTAAGTTCTCCGGGCCATCTTAAGCCTTCACCGAAGAGTAGTGA
66 ATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTAAAGAGTAGTGA
* * *
19857 AGCAAATAAATCTTAAGCCTTCATTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGACA
1 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGAAA
*
19922 ATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTGAAA-AGTAGTAA
66 ATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACT-AAAGAGTAGTGA
*
19973 AGCAAATCCATCTTAAGCCTTCA
1 AGCAAATCAATCTTAAGCCTTCA
19996 AGTAGTGAAG
Statistics
Matches: 239, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
116 237 0.99
117 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (116 bp):
AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTCATCAGTAAGCCTTCCGAAA
ATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTAAAGAGTAGTGA
Found at i:20007 original size:31 final size:31
Alignment explanation
Indices: 19964--20026 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
19954 CTTCACTGAA
19964 AAGTAGTAAAGCAAATCCATCTTAAGCCTTC
1 AAGTAGTAAAGCAAATCCATCTTAAGCCTTC
* *
19995 AAGTAGTGAAGCAAATCCATCTTAAGTCTTC
1 AAGTAGTAAAGCAAATCCATCTTAAGCCTTC
20026 A
1 A
20027 CTGAAGAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (31 bp):
AAGTAGTAAAGCAAATCCATCTTAAGCCTTC
Found at i:20098 original size:72 final size:70
Alignment explanation
Indices: 19943--20177 Score: 246
Period size: 72 Copynumber: 3.3 Consensus size: 70
19933 GTCCTCCGGG
* * *
19943 CCATCTTAAGCCTTCACTGAAAAGTAGTAAAGCAAATCCATCTTAAGCCTT-C--A-AGTAGTGA
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAG-AAATCCATCTTAAGCCTTACTGAGAGTAGTGA
*
20004 AGCAAAT
65 AG-TAAT
* * ** * *
20011 CCATCTTAAGTCTTCACTGAAGAGTAGTGAAGTGATCTATCATAAGCCTTCACCTGAGAGTAGTG
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGAAATCCATCTTAAGCCTT-A-CTGAGAGTAGTG
20076 AAGTAAT
64 AAGTAAT
* *
20083 CCATCTTAAGCCTTCACCGGAGAGTAGTGAAGCAAA-CCATTTTAAGCCTTTACTGGAGAGTAGT
1 CCATCTTAAGCCTTCACCGAAGAGTAGTGAAG-AAATCCATCTTAAGCC-TTACT-GAGAGTAGT
*
20147 GAAGTAAA
63 GAAGTAAT
*
20155 CCATCTTAAACCTTCACCGAAGA
1 CCATCTTAAGCCTTCACCGAAGA
20178 AATAGTAAAG
Statistics
Matches: 139, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
67 14 0.10
68 29 0.21
70 1 0.01
71 2 0.01
72 80 0.58
73 13 0.09
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (70 bp):
CCATCTTAAGCCTTCACCGAAGAGTAGTGAAGAAATCCATCTTAAGCCTTACTGAGAGTAGTGAA
GTAAT
Found at i:20274 original size:54 final size:55
Alignment explanation
Indices: 20190--20821 Score: 791
Period size: 54 Copynumber: 11.5 Consensus size: 55
20180 TAGTAAAGCA
* *
20190 GAAGAAGA-TGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGTGAACCCGTCTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGT-TT
* *
20245 -TAGAAGATT-TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCC-TTAA
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTT-T
**
20298 GAAGAAGA-TATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAA
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * *
20352 GAAGAAGATTATTTGAGTTCCATACT-CCTGAAAGAAAGAGGGAGAGAACCCGTTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTT
* * * *
20407 GCAGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTT
* * * * *
20463 -ACAAAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGTGAACCCGTTT
1 GA-AGAAGATTATTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTT
* * * *
20519 GCAGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTT
* * *
20575 GCAA-AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGTGAACCCGTTT
1 G-AAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * **
20630 GCAGAAGATTATTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAA
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
*
20685 GAAGAAGA-TGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * *
20739 GAAGAAGA-TGTCCGAGTTCCATACTCCATAGAGAAAGAGGGAGCGAACCCGTTT
1 GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
* * *
20793 GAAGAAGA-TGTCCGAGTTCTATACTCCCT
1 GAAGAAGATTATTCGAGTTCCATACTCCCT
20822 GAAAAATGGG
Statistics
Matches: 528, Mismatches: 37, Indels: 25
0.89 0.06 0.04
Matches are distributed among these distances:
52 1 0.00
53 2 0.00
54 225 0.43
55 141 0.27
56 158 0.30
57 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (55 bp):
GAAGAAGATTATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT
Found at i:31590 original size:31 final size:29
Alignment explanation
Indices: 31555--31645 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 29
31545 ATTTTTAAAT
31555 TTTTTATAAATTAAGATAAAAATAAAATATA
1 TTTTTA-AAATTAA-ATAAAAATAAAATATA
*
31586 TTTTTAAAAATAAAATTAAAAATAAAATATA
1 TTTTT-AAAATTAAA-TAAAAATAAAATATA
*
31617 GTTTTAAAATTCAAATAAGAAA-AAAATAT
1 TTTTTAAAATT-AAATAA-AAATAAAATAT
31646 TTATGCTAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
30 16 0.30
31 36 0.68
32 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (29 bp):
TTTTTAAAATTAAATAAAAATAAAATATA
Found at i:31606 original size:12 final size:12
Alignment explanation
Indices: 31589--31613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31579 AAATATATTT
31589 TTAAAAATAAAA
1 TTAAAAATAAAA
31601 TTAAAAATAAAA
1 TTAAAAATAAAA
31613 T
1 T
31614 ATAGTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
TTAAAAATAAAA
Found at i:31742 original size:24 final size:24
Alignment explanation
Indices: 31715--31763 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
31705 TATTTAATAA
31715 ATTAAGAGAAAAATAAAATA-TATT
1 ATTAA-AGAAAAATAAAATATTATT
* *
31739 ATTAAAGATATATAAAATATTATT
1 ATTAAAGAAAAATAAAATATTATT
31763 A
1 A
31764 ATTTCATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (24 bp):
ATTAAAGAAAAATAAAATATTATT
Found at i:43527 original size:15 final size:15
Alignment explanation
Indices: 43507--43563 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
43497 AACCGGGTAT
43507 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
* **
43522 CGGGTACCCACAAAATC
1 CGGGTACCC-GATTA-C
43539 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
43554 CGGGTACCCG
1 CGGGTACCCG
43564 TAACATCCGG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:43575 original size:17 final size:16
Alignment explanation
Indices: 43507--43575 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 16
43497 AACCGGGTAT
**
43507 CGGGTACCCGATTA-C
1 CGGGTACCCGAAAATC
*
43522 CGGGTACCCACAAAATC
1 CGGGTACCC-GAAAATC
**
43539 CGGGTACCCGATTA-C
1 CGGGTACCCGAAAATC
*
43554 CGGGTACCCGTAACATC
1 CGGGTACCCG-AAAATC
43571 CGGGT
1 CGGGT
43576 CGGGACACGG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
15 20 0.48
16 6 0.14
17 16 0.38
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.17
Consensus pattern (16 bp):
CGGGTACCCGAAAATC
Found at i:44907 original size:24 final size:24
Alignment explanation
Indices: 44879--44929 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
44869 GTGTAAGACT
44879 ATAAATGGATCCTAACCCTATATA
1 ATAAATGGATCCTAACCCTATATA
44903 ATAAATGGATCCTAACCCTATATA
1 ATAAATGGATCCTAACCCTATATA
44927 ATA
1 ATA
44930 TGTTAGAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (24 bp):
ATAAATGGATCCTAACCCTATATA
Found at i:47956 original size:2 final size:2
Alignment explanation
Indices: 47949--47977 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
47939 TTATTTATTC
47949 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47978 TTTATGATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48140 original size:24 final size:24
Alignment explanation
Indices: 48113--48158 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
48103 GGAATCCAAG
*
48113 CTCCATCTTTC-TTGATCTGAAGGC
1 CTCCA-CTTTCATTAATCTGAAGGC
*
48137 CTCCAGTTTCATTAATCTGAAG
1 CTCCACTTTCATTAATCTGAAG
48159 CAAAATGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (24 bp):
CTCCACTTTCATTAATCTGAAGGC
Found at i:48285 original size:57 final size:57
Alignment explanation
Indices: 48197--48316 Score: 233
Period size: 57 Copynumber: 2.1 Consensus size: 57
48187 TGAGGACTAA
48197 GGCCAACGGCAAGCTCTGGTTGTGGGCATGGGGGATAATAGTTCATCCTCAATGGTT
1 GGCCAACGGCAAGCTCTGGTTGTGGGCATGGGGGATAATAGTTCATCCTCAATGGTT
48254 GGCCAACGGCAAGCTCTGGTTGTGGGCATGGGGGATAATAGTTCATCCTCAATGGTT
1 GGCCAACGGCAAGCTCTGGTTGTGGGCATGGGGGATAATAGTTCATCCTCAATGGTT
48311 -GCCAAC
1 GGCCAAC
48317 CTCCTTCGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 6 0.10
57 57 0.90
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.25
Consensus pattern (57 bp):
GGCCAACGGCAAGCTCTGGTTGTGGGCATGGGGGATAATAGTTCATCCTCAATGGTT
Found at i:56111 original size:21 final size:21
Alignment explanation
Indices: 56085--56134 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
56075 AAATGTAGCT
*
56085 TCTCTCTGCTTCTATTGCTGC
1 TCTCTCTGCTTCTATCGCTGC
*
56106 TCTCTCTGCTTCTCTCGCTGC
1 TCTCTCTGCTTCTATCGCTGC
56127 TACTCTCT
1 T-CTCTCT
56135 CTACTTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.04, C:0.38, G:0.12, T:0.46
Consensus pattern (21 bp):
TCTCTCTGCTTCTATCGCTGC
Found at i:56132 original size:24 final size:24
Alignment explanation
Indices: 56085--56148 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
56075 AAATGTAGCT
* *
56085 TCTCTCTGCTTCTAT---TGCTGC
1 TCTCTCTGCTTCTCTCGCTGCTAC
56106 TCTCTCTGCTTCTCTCGCTGCTAC
1 TCTCTCTGCTTCTCTCGCTGCTAC
*
56130 TCTCTCTACTTCTCTCGCT
1 TCTCTCTGCTTCTCTCGCT
56149 TCAGCTTCGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 14 0.38
24 23 0.62
ACGTcount: A:0.05, C:0.39, G:0.11, T:0.45
Consensus pattern (24 bp):
TCTCTCTGCTTCTCTCGCTGCTAC
Found at i:56144 original size:12 final size:12
Alignment explanation
Indices: 56100--56145 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
56090 CTGCTTCTAT
*
56100 TGCTGCTCTCTC
1 TGCTTCTCTCTC
*
56112 TGCTTCTCTCGC
1 TGCTTCTCTCTC
*
56124 TGCTACTCTCTC
1 TGCTTCTCTCTC
*
56136 TACTTCTCTC
1 TGCTTCTCTC
56146 GCTTCAGCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.04, C:0.41, G:0.11, T:0.43
Consensus pattern (12 bp):
TGCTTCTCTCTC
Found at i:64571 original size:42 final size:42
Alignment explanation
Indices: 64483--64924 Score: 344
Period size: 42 Copynumber: 10.6 Consensus size: 42
64473 CTTTTCAACA
* * * * *
64483 GGCGTTGTAATAACAAACGCCACTAACGTGC-ACCTCTACTGT
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGA-CTCTATTGC
* * * *
64525 GGCGTTTCAACAACAATCGCCACTAAGGTACGAATCTATTGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
* ** *
64567 GGCGTTTTAATAACAAACCCCACTAAGGTTTGCCTCTATTGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
* * * *
64609 GGCGTTTTTATAACAAACGCCTCTAAGGTA-TAGCTCTATAGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGA-CTCTATTGC
** * * * * *
64651 GGCGTTTTAACGACAAACGTCACTACGGTTCGCCTCTATTGT
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
* * *
64693 TGCGTTTTAGTAACAAACGCCACTAAGGTTC--CTCTATTGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
* * *
64733 GGCGTTTTTATAACAAACGCCACTAAGGTA-TAGCTCTATAGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGA-CTCTATTGC
* * * * * *
64775 GGCATTTTAGTGACAAACGTCACTACGG-ATCGCCTCTATTGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTA-CGACTCTATTGC
** * *
64817 TTCGTTTTAGTAACAAACGCCACTAAGGTTC--CTCTATTGC
1 GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
* * ***
64857 GACGTTTTTATAACAAACGCCACTAAGGTACGGA-TCTATAAT
1 GGCGTTTTAATAACAAACGCCACTAAGGTAC-GACTCTATTGC
* * *
64899 GACGTTTTATTGACAAACGCCACTAA
1 GGCGTTTTAATAACAAACGCCACTAA
64925 TTTTGACATT
Statistics
Matches: 314, Mismatches: 74, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
40 69 0.22
41 1 0.00
42 243 0.77
43 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (42 bp):
GGCGTTTTAATAACAAACGCCACTAAGGTACGACTCTATTGC
Found at i:64624 original size:84 final size:84
Alignment explanation
Indices: 64483--64924 Score: 391
Period size: 84 Copynumber: 5.3 Consensus size: 84
64473 CTTTTCAACA
* * * * * * ** * *
64483 GGCGTTGTAATAACAAACGCCACTAACGTGCACCTCTACTGTGGCGTTTCAACAACAATCGCCAC
1 GGCGTTTTAATAACAAACGCCACTAAGGTTCGCCTCTATTGCGGCGTTTTTATAACAAACGCCAC
*
64548 TAAGGTACGAATCTATTGC
66 TAAGGTACGACTCTATTGC
* * *
64567 GGCGTTTTAATAACAAACCCCACTAAGGTTTGCCTCTATTGCGGCGTTTTTATAACAAACGCCTC
1 GGCGTTTTAATAACAAACGCCACTAAGGTTCGCCTCTATTGCGGCGTTTTTATAACAAACGCCAC
* *
64632 TAAGGTA-TAGCTCTATAGC
66 TAAGGTACGA-CTCTATTGC
** * * **
64651 GGCGTTTTAACGACAAACGTCACTACGGTTCGCCTCTATTGTTGCG-TTTTAGTAACAAACGCCA
1 GGCGTTTTAATAACAAACGCCACTAAGGTTCGCCTCTATTGCGGCGTTTTTA-TAACAAACGCCA
*
64715 CTAAGGTTC--CTCTATTGC
65 CTAAGGTACGACTCTATTGC
* * * * * *
64733 GGCGTTTTTATAACAAACGCCACTAAGGTATAG-CTCTATAGCGGC-ATTTTAGTGACAAACGTC
1 GGCGTTTTAATAACAAACGCCACTAAGGT-TCGCCTCTATTGCGGCGTTTTTA-TAACAAACGCC
* *
64796 ACTACGG-ATCGCCTCTATTGC
64 ACTAAGGTA-CGACTCTATTGC
** * *
64817 TTCGTTTTAGTAACAAACGCCACTAAGGTT--CCTCTATTGCGACGTTTTTATAACAAACGCCAC
1 GGCGTTTTAATAACAAACGCCACTAAGGTTCGCCTCTATTGCGGCGTTTTTATAACAAACGCCAC
***
64880 TAAGGTACGGA-TCTATAAT
66 TAAGGTAC-GACTCTATTGC
* * *
64899 GACGTTTTATTGACAAACGCCACTAA
1 GGCGTTTTAATAACAAACGCCACTAA
64925 TTTTGACATT
Statistics
Matches: 288, Mismatches: 58, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
82 116 0.40
83 16 0.06
84 156 0.54
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (84 bp):
GGCGTTTTAATAACAAACGCCACTAAGGTTCGCCTCTATTGCGGCGTTTTTATAACAAACGCCAC
TAAGGTACGACTCTATTGC
Found at i:64772 original size:124 final size:124
Alignment explanation
Indices: 64483--64886 Score: 533
Period size: 124 Copynumber: 3.2 Consensus size: 124
64473 CTTTTCAACA
* * * ** * * * * * *
64483 GGCGTTGTAATAACAAACGCCACTAACGTGCACCTCTACT-GTGGCGTTTCAACAACAATCGCCA
1 GGCGTTTTTATAACAAACGCCACTAAGGTATAGCTCTA-TAGCGGCGTTTTAACGACAAACGTCA
* * ** ** * *
64547 CTAAGGTACGAATCTATTGCGGCGTTTTAATAACAAACCCCACTAAGGTTTGCCTCTATTGC
65 CTACGGTTCGCCTCTATTGTTGCGTTTTAGTAACAAACGCCACTAAGG-TT-CCTCTATTGC
*
64609 GGCGTTTTTATAACAAACGCCTCTAAGGTATAGCTCTATAGCGGCGTTTTAACGACAAACGTCAC
1 GGCGTTTTTATAACAAACGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAACGACAAACGTCAC
64674 TACGGTTCGCCTCTATTGTTGCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGC
66 TACGGTTCGCCTCTATTGTTGCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGC
* **
64733 GGCGTTTTTATAACAAACGCCACTAAGGTATAGCTCTATAGCGGCATTTTAGTGACAAACGTCAC
1 GGCGTTTTTATAACAAACGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAACGACAAACGTCAC
*
64798 TACGGATCGCCTCTATTGCTT-CGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGC
66 TACGGTTCGCCTCTATTG-TTGCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGC
*
64857 GACGTTTTTATAACAAACGCCACTAAGGTA
1 GGCGTTTTTATAACAAACGCCACTAAGGTA
64887 CGGATCTATA
Statistics
Matches: 250, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
124 155 0.62
125 5 0.02
126 90 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (124 bp):
GGCGTTTTTATAACAAACGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAACGACAAACGTCAC
TACGGTTCGCCTCTATTGTTGCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGC
Found at i:64895 original size:124 final size:124
Alignment explanation
Indices: 64559--64923 Score: 534
Period size: 124 Copynumber: 2.9 Consensus size: 124
64549 AAGGTACGAA
** * *
64559 TCTATTGCGGCGTTTTAATAACAAACCCCACTAAGGTTTGCCTCTATTGCGGCGTTTTTATAACA
1 TCTATTGCTTCGTTTTAGTAACAAACGCCACTAAGG-TT-CCTCTATTGCGGCGTTTTTATAACA
* * *
64624 AACGCCTCTAAGGTATAGCTCTATAGCGGCGTTTTAACGACAAACGTCACTACGGTTCGCC
64 AACGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAATGACAAACGTCACTACGGATCGCC
64685 TCTATTG-TTGCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGCGGCGTTTTTATAACAA
1 TCTATTGCTT-CGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGCGGCGTTTTTATAACAA
* *
64749 ACGCCACTAAGGTATAGCTCTATAGCGGCATTTTAGTGACAAACGTCACTACGGATCGCC
65 ACGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAATGACAAACGTCACTACGGATCGCC
*
64809 TCTATTGCTTCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGCGACGTTTTTATAACAAA
1 TCTATTGCTTCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGCGGCGTTTTTATAACAAA
** * ** * * *
64874 CGCCACTAAGGTACGGATCTATAATGACGTTTTATTGACAAACGCCACTA
66 CGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAATGACAAACGTCACTA
64924 ATTTTGACAT
Statistics
Matches: 218, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
124 183 0.84
125 4 0.02
126 31 0.14
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (124 bp):
TCTATTGCTTCGTTTTAGTAACAAACGCCACTAAGGTTCCTCTATTGCGGCGTTTTTATAACAAA
CGCCACTAAGGTATAGCTCTATAGCGGCGTTTTAATGACAAACGTCACTACGGATCGCC
Found at i:70145 original size:18 final size:18
Alignment explanation
Indices: 70101--70138 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
70091 TCATTGAAAT
70101 CAATACCTTCTTTTTTAG
1 CAATACCTTCTTTTTTAG
70119 CAATACCTTCTTTTTTAG
1 CAATACCTTCTTTTTTAG
70137 CA
1 CA
70139 TATCCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.47
Consensus pattern (18 bp):
CAATACCTTCTTTTTTAG
Done.