genome.fa.s3123.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003123.1 Hibiscus syriacus cultivar Beakdansim tig00006539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185070

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1482--1707	114	2.0	114	92	1	373	34	15	19	30	1.93
2659--2833	74	2.4	74	82	4	192	30	16	22	30	1.96
3770--3848	40	2.0	40	97	2	151	32	12	22	31	1.92
3716--3891	89	1.9	92	81	7	216	35	13	23	27	1.93
3843--3951	53	2.0	54	80	5	123	37	17	22	22	1.94
4711--5602	113	7.8	112	85	8	870	38	14	18	28	1.90
5303--5695	124	3.2	124	85	7	526	40	15	19	24	1.90
5838--5892	3	18.7	3	85	10	78	32	0	1	65	1.03
5836--5892	14	4.1	14	80	19	75	33	0	1	64	1.04
6371--6438	3	22.7	3	85	11	95	32	0	1	66	1.01
7345--7385	14	3.1	14	83	16	52	12	0	2	85	0.70
7344--7410	19	3.5	18	80	11	71	20	0	1	77	0.85
7345--7400	25	2.2	26	87	3	78	17	0	1	80	0.80
7363--7435	26	2.8	25	80	13	76	26	1	1	71	1.02
7415--7460	3	15.3	3	82	8	58	26	4	0	69	1.07
7415--7463	19	2.5	19	81	15	64	26	4	0	69	1.06
7461--7495	16	2.2	16	90	10	54	60	0	0	40	0.97
7559--7781	120	1.9	118	83	4	288	37	7	8	46	1.62
8504--8567	28	2.3	28	86	7	87	35	1	4	57	1.29
14342--14392	18	2.9	18	91	5	79	41	11	1	45	1.52
14589--14657	3	23.0	3	96	0	129	65	0	1	33	1.02
19698--19796	24	4.1	24	85	0	117	25	17	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31471--31520	18	3.0	18	72	22	54	46	6	0	48	1.27
32880--32914	15	2.3	15	100	0	70	5	22	11	60	1.52
33938--34007	31	2.4	27	81	9	77	32	11	15	40	1.83
34091--34467	174	2.1	174	84	10	480	45	7	3	43	1.51
41353--41447	29	3.3	28	71	12	93	33	12	6	47	1.67
41438--41597	87	1.8	86	90	1	257	32	11	10	45	1.74
42053--42178	63	2.0	63	100	0	252	33	4	31	30	1.78
65130--65204	38	2.0	37	82	12	91	45	2	4	48	1.35
65362--65411	20	2.5	20	100	0	100	20	18	12	50	1.78
70440--70471	10	3.2	10	95	0	55	9	9	25	56	1.61
72026--72076	16	3.3	16	89	5	79	11	9	17	60	1.57
80008--80048	19	2.2	19	100	0	82	46	14	19	19	1.84
85994--86042	2	24.5	2	100	0	98	48	0	0	51	1.00
88805--88894	25	3.6	24	71	12	74	52	1	0	46	1.07
88844--88890	20	2.4	20	75	3	51	48	0	0	51	1.00
90300--90356	14	4.1	14	76	13	55	43	1	0	54	1.10
90387--90487	42	2.5	40	81	12	118	47	1	1	48	1.24
90410--90485	22	3.6	21	72	16	59	46	2	1	50	1.24
90411--90457	22	2.0	23	84	8	60	44	2	0	53	1.12
90477--90526	25	2.1	24	85	7	66	62	2	2	34	1.18
90495--90534	15	2.8	14	92	7	71	67	0	0	32	0.91
90561--90634	27	2.8	27	71	17	73	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90646--90701	8	7.5	8	76	15	57	53	1	0	44	1.11
90644--90701	15	3.9	15	81	4	73	55	1	0	43	1.10
90623--90696	29	2.6	27	85	10	85	54	1	0	44	1.08
90747--90795	13	3.8	13	85	15	59	61	0	4	34	1.15
90757--90802	13	3.4	13	82	8	56	60	0	2	36	1.09
101235--101302	29	2.3	30	78	19	81	32	1	1	64	1.11
106489--106549	29	2.1	29	93	0	104	24	8	11	55	1.62
108800--108838	21	1.9	20	84	5	51	48	2	0	48	1.15
113812--113836	12	2.1	12	100	0	50	16	0	0	84	0.63
114340--114394	19	2.9	19	84	10	60	43	0	5	50	1.25
114699--114799	30	3.4	30	87	5	134	38	12	5	42	1.68
115491--115600	40	2.8	40	81	1	132	35	13	9	41	1.76
116051--116091	21	2.0	21	90	0	64	41	19	0	39	1.52
129145--129172	2	14.0	2	100	0	56	50	0	50	0	1.00
138714--138783	19	3.7	19	100	0	140	30	22	21	25	1.99
138852--138903	20	2.6	20	100	0	104	38	17	21	23	1.93
139739--139792	24	2.2	24	90	0	81	22	18	18	40	1.91
139982--140018	14	2.6	14	91	4	56	51	21	21	5	1.68
142137--142407	141	1.9	140	94	0	479	29	12	14	43	1.82
142378--142622	20	12.9	20	77	12	230	33	22	17	25	1.96
142386--142602	54	3.9	54	83	6	247	34	23	17	24	1.96
144270--144372	21	4.9	22	73	11	65	23	18	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144268--144376	42	2.6	42	76	2	112	23	18	36	21	1.95
144867--144922	20	2.8	20	91	0	85	37	25	17	19	1.94
144914--144948	14	2.5	14	100	0	70	42	22	25	8	1.82
146916--146969	20	2.7	20	88	0	81	40	25	16	16	1.89
147367--147419	22	2.4	22	90	0	88	16	18	39	24	1.91
147584--147677	40	2.3	40	85	0	134	24	21	25	28	1.99
147584--147660	20	3.8	20	91	0	127	24	20	27	27	1.99
148837--148866	6	5.0	6	100	0	60	66	0	0	33	0.92
150035--150062	6	4.7	6	100	0	56	46	0	0	53	1.00
150234--150264	16	1.9	16	93	0	53	54	19	16	9	1.68
155036--155127	42	2.2	42	78	7	98	25	7	4	63	1.40
155086--155161	34	2.3	32	77	8	80	26	11	5	56	1.56
155137--155233	41	2.3	43	81	8	119	27	15	8	48	1.73
155137--155245	41	2.6	41	75	8	103	26	16	7	49	1.72
158978--159043	21	3.4	21	66	23	63	45	18	4	31	1.69
163093--163124	16	2.0	16	93	0	55	34	25	6	34	1.81
165098--165136	17	2.4	17	86	4	53	66	0	2	30	1.05
167512--167548	14	2.6	14	95	0	65	10	13	16	59	1.61
177961--178004	19	2.3	19	84	4	52	27	4	22	45	1.72
179168--179309	36	4.0	36	94	0	241	33	23	23	19	1.97
179996--180022	13	2.1	13	100	0	54	44	7	22	25	1.79
180879--180937	31	1.9	31	92	0	100	40	6	10	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180963--181007	22	2.0	22	95	0	81	51	11	0	37	1.38
180967--181015	22	2.2	22	85	3	62	55	12	0	32	1.37
180604--181209	226	2.7	221	91	4	970	46	10	6	37	1.64
181105--181163	31	1.9	31	89	0	91	40	5	10	44	1.60
181749--181787	17	2.4	16	84	16	53	61	0	0	38	0.96
181761--181810	25	2.0	25	88	0	73	60	4	0	36	1.16
181836--181867	15	2.1	16	88	11	50	43	6	3	46	1.44

Tables:   1

The End!