Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003124.1 Hibiscus syriacus cultivar Beakdansim tig00006541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67810

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3264--3404
41
3.5
40
80
7
153
30
17
15
36
1.91
3287--3412
41
3.1
41
83
7
168
32
16
15
34
1.91
3468--3566
42
2.4
42
82
3
119
23
17
20
39
1.92
3545--3621
40
1.9
41
86
2
111
29
23
18
28
1.97
4355--4481
43
3.0
43
78
5
141
28
18
21
31
1.97
8382--8500
42
2.9
41
85
1
157
31
21
19
28
1.97
9080--9133
24
2.3
24
87
9
76
33
3
5
57
1.40
11925--12119
92
2.2
89
92
2
318
21
16
17
44
1.87
12574--12652
35
2.3
35
93
0
131
29
22
18
29
1.98
17489--17542
21
2.6
20
75
13
56
37
16
24
22
1.94
21164--21225
2
32.0
2
93
6
110
50
0
0
50
1.00
23311--23370
30
2.0
31
86
3
86
36
3
15
45
1.62
23450--23512
21
2.9
22
88
4
92
22
38
17
22
1.93
24850--24897
19
2.5
20
82
3
62
52
6
12
29
1.63
26076--26136
31
2.0
30
93
3
104
32
6
16
44
1.73
26216--26336
21
5.7
21
79
9
138
22
34
19
23
1.96
26356--26421
20
3.3
20
91
0
105
15
28
25
30
1.96
31513--31541
2
14.5
2
100
0
58
51
0
0
48
1.00
47001--47050
21
2.3
22
93
3
84
40
10
20
30
1.85
58774--58834
19
3.2
19
75
11
61
22
31
29
16
1.96
63469--63547
39
2.0
40
92
7
135
53
2
17
26
1.57
63905--63938
16
2.2
15
89
5
50
47
2
0
50
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64351--64401
12
4.3
12
82
7
61
72
0
1
25
0.95
65290--65388
42
2.3
44
92
3
166
22
3
5
69
1.22
65414--65472
21
2.7
23
74
12
61
18
0
6
74
1.03
65473--65502
15
1.9
16
93
6
53
43
20
16
20
1.88
66160--66221
11
5.5
12
85
11
78
22
24
35
17
1.95
66161--66221
17
3.6
17
100
0
122
22
22
36
18
1.95

Tables:   1

The End!