Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003125.1 Hibiscus syriacus cultivar Beakdansim tig00006542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36470

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4778--4852
20
3.8
20
94
0
132
30
16
16
37
1.90
4762--4868
40
2.7
38
83
9
124
35
14
16
32
1.90
8573--8652
6
13.3
6
86
5
108
18
0
68
12
1.20
8573--8661
18
4.9
18
87
5
99
19
0
68
12
1.20
8710--8816
21
5.1
21
73
4
90
24
4
63
7
1.40
8649--9030
42
9.7
42
73
13
289
24
4
61
9
1.45
8638--8920
119
2.4
119
89
3
428
24
4
61
9
1.46
8631--8801
78
2.2
77
94
1
306
23
4
61
9
1.45
8631--8998
197
1.9
197
94
2
659
24
4
61
8
1.45
8725--9000
21
13.8
21
67
18
126
24
4
61
8
1.44
8771--9030
78
3.4
77
88
6
391
24
4
61
8
1.44
8813--9040
36
6.1
36
71
14
156
24
3
62
9
1.42
9159--9214
26
2.1
27
96
3
105
25
10
53
10
1.67
10086--10116
16
1.9
16
93
0
53
58
6
6
29
1.48
10138--10181
2
22.0
2
100
0
88
50
0
0
50
1.00
10649--10729
2
40.5
2
100
0
162
50
0
0
49
1.00
11631--11674
11
4.1
12
77
22
53
45
0
0
54
0.99
14413--14459
19
2.4
20
85
3
60
38
17
14
29
1.89
18158--18219
6
10.3
6
82
6
72
19
0
69
11
1.18
18158--18245
18
4.7
18
80
13
88
19
1
67
12
1.29
18175--18577
21
20.3
21
64
14
104
23
4
62
9
1.45
18206--18447
78
3.1
78
97
0
457
23
4
61
10
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18236--18677
120
3.7
118
72
11
382
24
4
61
9
1.45
18404--18677
78
3.5
78
88
1
397
24
4
61
8
1.45
18236--18645
198
2.1
198
94
1
725
24
4
61
8
1.45
18509--18646
21
6.9
21
66
22
82
25
4
61
8
1.44
18808--18862
27
2.0
27
96
0
101
25
10
52
10
1.69
19781--19822
2
21.0
2
100
0
84
50
0
0
50
1.00
21219--21262
11
4.1
12
77
22
53
45
0
0
54
0.99
21912--21951
20
2.0
20
85
5
53
47
12
5
35
1.63
26008--26082
20
3.8
20
94
0
132
30
16
16
37
1.90
25992--26098
40
2.7
38
83
9
124
35
14
16
32
1.90
29806--29884
6
13.3
6
86
7
108
18
0
68
12
1.21
29806--29893
18
4.9
17
85
10
88
19
0
68
12
1.21
29839--29935
21
4.7
21
71
8
65
23
2
65
8
1.30
29870--30232
42
9.1
42
75
12
334
25
4
61
9
1.46
29863--30034
78
2.2
78
95
0
317
23
4
62
9
1.44
29943--30049
21
5.1
21
73
4
90
24
4
63
7
1.40
29870--30154
120
2.4
119
90
2
437
24
4
61
9
1.46
30003--30070
21
3.2
21
76
15
77
23
7
64
4
1.37
29991--30264
78
3.5
78
88
1
406
24
4
62
8
1.43
29863--30270
120
3.5
117
72
12
307
24
4
62
9
1.44
30046--30274
36
6.1
36
72
13
165
24
3
62
9
1.42
30395--30447
27
2.0
27
96
0
97
24
11
52
11
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31328--31358
16
1.9
16
93
0
53
58
6
6
29
1.48
31380--31421
2
21.0
2
100
0
84
50
0
0
50
1.00
31889--31961
2
38.0
2
91
8
125
49
0
0
50
1.00
31889--31961
21
3.4
21
92
3
119
49
0
0
50
1.00
32853--32896
11
4.1
12
77
22
53
45
0
0
54
0.99
34455--34533
40
2.0
39
83
9
99
51
8
15
24
1.71
35629--35681
26
2.0
26
100
0
106
43
11
15
30
1.81

Tables:   1

The End!