Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003127.1 Hibiscus syriacus cultivar Beakdansim tig00006549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73841

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12027--12273
20
12.4
20
88
0
341
26
19
21
32
1.97
12801--12956
65
2.4
64
86
5
208
30
21
17
30
1.96
19265--19318
27
2.1
27
86
6
76
40
9
5
44
1.60
21286--21441
65
2.4
64
84
3
197
29
19
18
32
1.96
22109--22202
36
2.6
36
81
8
113
45
15
15
22
1.84
22141--22377
124
1.9
124
92
0
393
36
18
17
27
1.93
22298--22479
93
2.0
93
91
0
292
35
18
16
29
1.93
22671--22710
11
3.6
11
86
10
55
42
0
0
57
0.98
27315--27348
17
2.0
17
94
0
59
23
32
11
32
1.91
29183--29234
22
2.4
22
74
3
52
36
1
0
61
1.07
32167--32205
19
2.1
19
85
9
53
17
35
20
25
1.95
33907--33965
5
11.8
5
94
0
82
5
40
37
16
1.71
33963--34029
6
11.2
6
96
0
116
2
16
49
31
1.61
34304--34358
22
2.5
22
75
0
56
29
10
23
36
1.89
34602--34640
19
2.1
19
85
9
53
17
35
20
25
1.95
36345--36403
5
11.8
5
94
0
82
5
40
37
16
1.71
36401--36467
6
11.2
6
96
0
116
2
16
49
31
1.61
36742--36796
22
2.5
22
75
0
56
29
10
23
36
1.89
37040--37078
19
2.1
19
85
9
53
17
35
20
25
1.95
38782--38850
5
13.8
5
95
0
102
4
40
37
17
1.69
38848--38896
6
8.2
6
95
0
80
4
16
48
30
1.64
39171--39225
22
2.5
22
75
0
56
29
9
23
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42865--42891
13
2.1
13
100
0
54
25
0
0
74
0.83
48450--48538
39
2.3
39
94
0
151
20
2
32
44
1.64
53828--53856
2
14.5
2
100
0
58
51
0
0
48
1.00
54939--55009
10
7.3
9
78
12
52
14
26
28
30
1.95
54946--54993
10
4.8
10
80
10
62
12
20
29
37
1.90
54938--55009
19
3.7
20
80
9
69
15
26
27
30
1.96
55006--55046
5
7.8
5
84
10
55
21
56
19
2
1.54
55016--55053
17
2.2
17
90
0
58
21
50
21
7
1.74
55683--55730
21
2.3
21
79
13
55
27
4
22
45
1.70
64180--64530
176
2.0
176
90
0
558
29
28
19
23
1.98

Tables:   1

The End!