genome.fa.s3128.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003128.1 Hibiscus syriacus cultivar Beakdansim tig00006555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57290

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1340--1379	15	2.6	16	88	4	55	62	0	30	7	1.23
2420--2488	3	22.3	3	82	11	86	33	0	0	66	0.92
11618--12004	125	3.1	125	90	0	578	33	16	26	24	1.96
13172--14107	215	4.3	215	79	8	964	33	16	19	31	1.93
13602--13714	42	2.7	42	78	5	113	25	21	19	33	1.97
14148--14213	22	3.1	21	66	16	55	31	15	21	31	1.94
14135--14222	42	2.1	42	91	0	140	29	15	21	32	1.95
14135--14246	42	2.7	42	83	8	131	30	14	22	33	1.93
14262--14411	37	4.1	37	89	1	230	34	21	19	24	1.96
14264--14403	73	1.9	73	92	0	235	35	20	20	23	1.96
14579--14651	3	24.7	3	94	2	130	35	0	0	64	0.94
18201--18251	20	2.5	20	93	0	84	41	13	19	25	1.88
18411--18450	20	2.0	21	95	5	73	32	22	20	25	1.98
18570--18616	20	2.3	20	100	0	94	34	34	12	19	1.89
20430--20468	2	19.5	2	100	0	78	51	0	0	48	1.00
22912--22939	2	14.0	2	100	0	56	50	0	0	50	1.00
25150--25175	2	13.0	2	100	0	52	50	0	0	50	1.00
30629--30683	12	4.6	12	73	8	58	49	18	14	18	1.80
30619--30706	24	3.7	24	79	0	86	51	15	11	21	1.75
30665--30718	24	2.2	24	77	6	56	51	14	12	20	1.75
32320--32564	34	7.0	33	72	18	162	44	4	6	44	1.48
32331--32554	35	6.3	37	76	16	165	44	4	6	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32380--32404	12	2.1	12	100	0	50	40	8	8	44	1.63
32297--32635	36	9.5	36	70	17	185	43	3	7	46	1.48
32655--32700	25	1.9	24	86	8	67	34	0	8	56	1.30
32690--32747	3	19.0	3	96	3	107	34	0	0	65	0.93
35845--35890	19	2.4	19	92	0	74	13	13	8	65	1.48
39283--40112	80	10.0	81	80	8	888	28	25	21	24	1.99
39331--40112	164	4.8	164	96	0	1386	28	25	21	23	1.99
40798--41118	74	4.5	70	76	15	275	44	4	6	44	1.49
40934--40958	12	2.1	12	100	0	50	40	8	8	44	1.63
40836--41109	35	7.7	34	74	17	161	45	4	6	44	1.47
40794--41120	34	9.0	36	73	19	238	44	4	6	44	1.50
40931--41193	37	7.2	39	67	14	93	41	3	8	46	1.49
41260--41315	3	18.3	3	96	3	103	33	0	0	66	0.92
44092--44155	30	2.1	30	94	0	110	42	29	14	14	1.84
46174--46243	12	5.8	12	83	6	88	51	17	15	15	1.77
46172--46280	24	4.5	24	81	2	130	48	16	14	20	1.81
46172--46280	48	2.3	47	87	3	146	48	16	14	20	1.81
48775--48833	18	3.3	18	76	4	57	15	20	44	20	1.87
48843--48919	9	7.8	10	75	12	70	37	29	18	14	1.90
48843--48919	30	2.6	30	95	0	145	37	29	18	14	1.90
53448--53482	16	2.1	18	89	10	56	65	0	8	25	1.21
53603--53646	22	2.0	23	86	13	65	61	9	0	29	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53585--53686	31	3.3	29	76	12	89	59	5	3	30	1.39
54016--54153	37	3.8	36	84	6	163	30	13	13	42	1.84
54052--54150	34	2.8	34	92	7	155	29	13	14	43	1.83
54694--55651	204	4.7	205	90	4	1391	22	18	26	33	1.97
54694--55651	99	9.3	102	88	6	1309	22	18	26	33	1.97
56242--56403	68	2.4	67	81	5	193	37	9	21	31	1.85
56501--56570	36	1.9	36	94	0	122	40	14	22	22	1.90
56501--56620	35	3.4	35	72	14	102	38	15	20	25	1.92

Tables:   1

The End!