Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003129.1 Hibiscus syriacus cultivar Beakdansim tig00006565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77343

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5429--5591
37
4.4
36
77
10
159
46
4
2
46
1.35
19975--20025
19
2.7
19
96
3
95
31
0
21
47
1.51
21577--21655
10
7.9
10
92
0
131
8
26
0
64
1.23
21577--21655
30
2.6
30
97
0
149
8
26
0
64
1.23
23549--23589
15
2.8
15
79
17
50
65
4
26
2
1.25
31722--31851
29
4.4
29
84
3
172
50
11
0
37
1.44
33517--33558
20
2.2
19
87
12
59
38
2
2
57
1.25
34072--34117
22
2.1
22
100
0
92
45
6
8
39
1.61
35580--35639
30
2.0
31
90
6
97
31
6
20
41
1.78
40585--40697
41
2.8
41
86
4
149
36
15
17
30
1.92
41116--41229
41
2.7
40
79
11
113
26
16
21
35
1.95
41114--41229
42
2.8
39
77
12
106
25
17
21
35
1.95
41560--41589
8
3.8
8
100
0
60
50
10
26
13
1.73
41588--41617
8
3.8
8
100
0
60
53
10
13
23
1.69
41707--41762
29
1.9
29
82
13
71
26
7
19
46
1.76
48271--48377
21
5.1
21
88
2
126
36
20
41
1
1.63
48275--48392
42
2.8
42
76
12
114
38
20
39
1
1.63
48279--48392
21
5.4
21
87
3
97
37
20
40
1
1.63
48833--48956
43
2.9
43
81
6
144
27
25
17
29
1.98
48730--48999
43
6.2
44
72
13
134
28
21
20
29
1.98
52066--52091
9
2.9
9
100
0
52
69
0
0
30
0.89
52671--52796
45
2.6
48
77
13
132
43
1
6
48
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52763--52805
5
8.4
5
92
7
61
44
0
0
55
0.99
52765--52805
17
2.3
17
91
8
64
43
0
0
56
0.99
53005--53038
3
11.3
3
100
0
68
32
0
0
67
0.91
52489--53166
2
357.5
2
66
21
169
45
2
6
45
1.45
53637--53678
2
21.0
2
100
0
84
50
0
0
50
1.00
54114--54412
149
2.0
149
90
1
465
27
15
22
34
1.94
59066--59110
16
2.8
16
83
9
56
55
20
6
17
1.64
59784--59867
13
6.5
13
73
10
73
47
13
9
29
1.74
59784--59896
26
4.3
26
83
4
138
46
11
11
30
1.75
61806--61918
15
7.5
15
67
15
72
16
17
18
46
1.84
61781--61853
30
2.4
30
86
4
103
17
16
19
46
1.84
61763--61905
75
1.9
75
91
0
232
18
18
18
44
1.88
61810--61954
45
3.2
45
83
1
182
19
17
18
44
1.87
61847--61918
30
2.4
31
76
6
85
18
18
18
45
1.85
62704--62874
68
2.5
68
90
0
261
45
25
3
25
1.69
70256--70845
81
7.4
81
84
5
664
34
13
21
31
1.92
70257--70844
243
2.4
241
85
5
744
34
13
21
30
1.92
72202--72238
12
3.1
12
100
0
74
43
8
0
48
1.32
72988--73042
24
2.3
24
96
0
101
34
18
23
23
1.96
74102--74142
21
1.9
22
85
5
57
58
0
0
41
0.98
74231--74267
2
18.5
2
100
0
74
48
0
0
51
1.00
74247--74326
30
2.8
28
81
10
99
42
8
3
45
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74307--74336
13
2.3
13
94
0
51
43
0
3
53
1.17
74307--74339
11
2.8
12
86
13
50
42
0
6
51
1.26

Tables:   1

The End!