Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003130.1 Hibiscus syriacus cultivar Beakdansim tig00006566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95527

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432--457
13
2.0
13
100
0
52
38
7
23
30
1.83
757--801
18
2.6
18
92
3
74
73
4
17
4
1.17
2954--2994
18
2.3
18
91
0
64
48
4
2
43
1.37
7004--7140
59
2.3
60
81
6
154
35
15
14
35
1.88
10361--10395
17
2.1
17
89
10
54
28
20
20
31
1.97
11282--11351
30
2.4
29
83
11
81
45
1
0
52
1.09
11282--11351
31
2.4
31
83
11
85
45
1
0
52
1.09
11338--11408
31
2.1
35
85
12
96
47
4
0
47
1.21
14226--14300
23
3.3
23
75
7
80
49
13
12
25
1.76
25875--25922
13
3.8
13
80
2
62
64
12
6
16
1.46
26058--26105
24
2.0
24
91
0
78
12
35
18
33
1.89
26070--26104
18
1.9
18
94
0
61
8
37
20
34
1.83
28138--28189
9
6.1
9
76
13
56
63
1
0
34
1.06
28135--28187
16
3.2
17
84
10
65
66
1
0
32
1.03
28141--28190
17
3.0
17
91
2
75
60
4
0
36
1.16
28138--28210
38
1.9
37
81
10
85
64
2
1
31
1.16
32049--32085
17
2.1
18
85
14
51
64
8
5
21
1.40
38096--38200
27
3.5
30
75
21
96
44
0
2
52
1.15
38342--38377
19
2.0
17
89
10
54
61
0
0
38
0.96
38513--38562
20
2.5
20
96
0
91
36
16
8
40
1.77
38545--38626
30
2.8
30
94
1
139
35
19
7
37
1.80
38545--38632
45
2.0
44
93
2
149
32
20
6
39
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38545--38626
15
5.5
15
88
2
121
35
19
7
37
1.80
40505--40542
19
1.9
19
89
5
58
81
2
5
10
0.94
40637--40675
16
2.3
18
86
8
55
71
0
5
23
1.05
41835--41935
51
2.0
50
90
1
157
46
5
2
44
1.43
43803--43842
2
20.5
2
89
5
64
50
2
0
47
1.14
52350--52392
18
2.4
18
92
7
70
69
0
9
20
1.15
53272--53344
38
1.9
38
86
10
105
46
5
2
45
1.40
59279--59334
22
2.5
22
97
0
103
23
28
23
25
1.99
65720--65769
21
2.4
21
86
6
66
30
20
8
42
1.80
66107--66157
22
2.4
22
90
6
79
27
31
19
21
1.97
93154--93192
17
2.3
17
86
8
53
66
5
0
28
1.12
93294--93326
14
2.3
15
89
5
50
36
3
0
60
1.12

Tables:   1

The End!