genome.fa.s3131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003131.1 Hibiscus syriacus cultivar Beakdansim tig00006567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85766

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108--187	19	4.4	19	75	16	71	45	27	17	10	1.80
125--216	33	2.8	32	90	6	141	45	28	18	7	1.76
212--345	19	7.6	19	73	18	119	11	19	23	45	1.82
217--307	32	2.8	32	93	1	155	10	20	21	46	1.82
2246--2281	14	2.6	14	95	0	63	33	0	22	44	1.53
2388--2488	19	5.6	19	83	14	142	43	17	23	14	1.87
2517--2771	19	14.4	19	78	16	289	13	19	18	48	1.81
2495--2652	52	2.9	52	91	4	244	15	20	17	46	1.84
2495--2771	90	3.2	90	85	7	362	14	19	18	47	1.82
2479--2771	142	2.1	139	89	5	439	14	19	18	47	1.83
2517--2743	52	4.2	55	88	6	278	14	20	17	48	1.81
5047--5071	12	2.1	12	100	0	50	0	28	0	72	0.86
5246--5292	24	2.0	24	87	8	69	38	21	14	25	1.92
5974--6342	20	18.5	20	86	4	458	20	18	26	34	1.96
6932--6999	28	2.5	26	77	15	75	69	1	4	25	1.16
6943--7002	28	2.3	25	86	11	77	66	1	3	28	1.17
7147--7188	18	2.3	19	95	4	77	38	0	4	57	1.20
7740--7792	27	1.9	28	81	11	65	56	1	0	41	1.10
9157--9190	18	1.9	17	88	5	50	14	0	5	79	0.91
10761--10798	12	3.1	12	79	20	51	52	0	0	47	1.00
10793--10887	16	6.7	15	71	22	55	35	1	0	63	1.02
10796--10838	14	2.9	14	77	12	50	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796--10903	32	3.4	30	74	20	103	34	0	0	63	1.07
10811--10902	25	4.1	24	78	17	92	34	0	1	64	1.01
10815--10886	7	10.3	7	76	16	60	34	0	0	65	0.93
10805--10898	16	5.8	16	71	21	70	34	1	1	63	1.08
13985--14038	25	2.4	21	77	17	54	42	3	1	51	1.30
14388--14431	19	2.3	19	92	0	70	22	22	20	34	1.97
15044--15104	26	2.4	26	86	8	81	49	8	1	40	1.42
15788--15863	35	2.2	35	92	0	125	39	22	2	35	1.68
16260--16508	131	1.9	130	90	0	399	36	15	12	34	1.86
16285--16539	131	1.9	130	80	4	289	38	14	13	33	1.85
16978--17011	16	2.0	18	88	11	54	64	5	2	26	1.30
18179--18232	20	2.7	20	91	0	81	44	1	22	31	1.63
19490--19542	26	2.1	25	89	3	79	41	0	11	47	1.39
19796--19820	2	12.5	2	100	0	50	52	0	0	48	1.00
26731--26792	23	2.7	23	80	2	72	30	17	19	32	1.95
30445--30570	60	2.1	61	88	8	188	33	17	15	33	1.92
36422--36453	2	16.0	2	100	0	64	50	0	0	50	1.00
45256--45293	2	19.0	2	100	0	76	50	0	0	50	1.00
45831--45859	2	14.5	2	100	0	58	48	0	0	51	1.00
46968--47024	3	18.3	3	84	13	71	29	0	1	68	1.00
46964--47024	13	4.8	13	82	11	74	29	0	1	68	0.99
48096--48142	20	2.4	19	80	16	51	25	2	14	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52775--52838	16	4.0	15	78	9	65	78	10	10	0	0.98
53880--53944	4	16.2	4	76	17	64	50	26	0	23	1.49
53878--53950	28	2.6	28	86	2	103	52	26	0	21	1.48
54378--54679	102	2.9	101	84	6	376	32	16	10	40	1.83
54883--54934	26	2.0	27	92	3	88	26	9	11	51	1.68
54967--55025	28	2.1	28	90	6	93	35	13	13	37	1.84
54807--55031	114	1.9	119	80	7	266	27	14	13	44	1.82
54982--55104	65	1.9	65	83	9	162	26	14	12	46	1.80
55097--55170	29	2.6	30	77	10	75	33	14	6	44	1.72
55257--55378	66	1.9	64	88	6	183	27	13	13	45	1.81
55437--55511	31	2.4	31	82	8	82	30	14	13	41	1.84
55500--55543	15	2.9	15	93	0	70	31	20	4	43	1.72
55596--55653	29	2.0	29	80	9	66	31	12	12	44	1.78
55844--56021	66	2.7	63	78	7	180	25	20	15	38	1.91
56235--56517	134	2.1	134	86	3	396	26	31	18	24	1.97
56739--56792	3	17.3	3	80	14	56	29	0	3	66	1.09
71896--71931	2	18.0	2	100	0	72	50	0	50	0	1.00
72482--72513	5	6.8	5	86	13	50	37	0	0	62	0.95
72667--72781	60	1.9	60	82	3	142	40	6	23	28	1.80
73152--73177	2	13.0	2	100	0	52	50	0	0	50	1.00
73227--73265	19	2.1	19	85	9	53	48	0	0	51	1.00
84065--84103	17	2.2	18	86	4	53	66	0	5	28	1.12

Tables:   1

The End!