Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003133.1 Hibiscus syriacus cultivar Beakdansim tig00006571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 143138
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:6975 original size:42 final size:42
Alignment explanation
Indices: 6916--7001 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
6906 CAAACCAAGC
6916 TACTTTTTCAACATAATTTAACAACTAGCTCACCTCAAATGT
1 TACTTTTTCAACATAATTTAACAACTAGCTCACCTCAAATGT
*
6958 TACTTTTTCAACATAATTTAACAACTAGCTCACCTCCAATGT
1 TACTTTTTCAACATAATTTAACAACTAGCTCACCTCAAATGT
7000 TA
1 TA
7002 AATCAACATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (42 bp):
TACTTTTTCAACATAATTTAACAACTAGCTCACCTCAAATGT
Found at i:9650 original size:27 final size:27
Alignment explanation
Indices: 9610--9667 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
9600 GCCACATAAC
* *
9610 CTTTTTTTCATTGCACAATTTCTCTTT
1 CTTTCTTTCATTGCACAATTTCTCCTT
* *
9637 CTTTCTTTCTTTGCACAATTTTTCCTT
1 CTTTCTTTCATTGCACAATTTCTCCTT
9664 CTTT
1 CTTT
9668 TTCTTCTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.12, C:0.24, G:0.03, T:0.60
Consensus pattern (27 bp):
CTTTCTTTCATTGCACAATTTCTCCTT
Found at i:10885 original size:11 final size:11
Alignment explanation
Indices: 10871--10895 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10861 TCAAGGAAAC
10871 AAATAAAAATA
1 AAATAAAAATA
10882 AAATAAAAATA
1 AAATAAAAATA
10893 AAA
1 AAA
10896 AGAAAGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:22672 original size:10 final size:10
Alignment explanation
Indices: 22659--22731 Score: 56
Period size: 10 Copynumber: 7.3 Consensus size: 10
22649 AATACAAACG
22659 AACGAACATA
1 AACGAACATA
* *
22669 AACGAGCTTA
1 AACGAACATA
* **
22679 AACAAATGTA
1 AACGAACATA
22689 AACGAACATA
1 AACGAACATA
* *
22699 AACGAGCTTA
1 AACGAACATA
* **
22709 AACAAATGTA
1 AACGAACATA
22719 AACGAACATA
1 AACGAACATA
22729 AAC
1 AAC
22732 ATATGAACAT
Statistics
Matches: 45, Mismatches: 18, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
10 45 1.00
ACGTcount: A:0.55, C:0.18, G:0.12, T:0.15
Consensus pattern (10 bp):
AACGAACATA
Found at i:22693 original size:30 final size:30
Alignment explanation
Indices: 22659--22731 Score: 146
Period size: 30 Copynumber: 2.4 Consensus size: 30
22649 AATACAAACG
22659 AACGAACATAAACGAGCTTAAACAAATGTA
1 AACGAACATAAACGAGCTTAAACAAATGTA
22689 AACGAACATAAACGAGCTTAAACAAATGTA
1 AACGAACATAAACGAGCTTAAACAAATGTA
22719 AACGAACATAAAC
1 AACGAACATAAAC
22732 ATATGAACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.55, C:0.18, G:0.12, T:0.15
Consensus pattern (30 bp):
AACGAACATAAACGAGCTTAAACAAATGTA
Found at i:26525 original size:56 final size:56
Alignment explanation
Indices: 26453--26563 Score: 186
Period size: 56 Copynumber: 2.0 Consensus size: 56
26443 GTTTATGTTT
* * *
26453 ATGTTCGTTTATTAAGTTAAATAAACGAGCATGAATAAAATTCTTAGATTCATTTC
1 ATGTTCGCTTACTAAGTTAAATAAACGAGCATGAACAAAATTCTTAGATTCATTTC
*
26509 ATGTTCGCTTACTAAGTTAAATAAACGAGTATGAACAAAATTCTTAGATTCATTT
1 ATGTTCGCTTACTAAGTTAAATAAACGAGCATGAACAAAATTCTTAGATTCATTT
26564 AATAAACGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (56 bp):
ATGTTCGCTTACTAAGTTAAATAAACGAGCATGAACAAAATTCTTAGATTCATTTC
Found at i:27105 original size:19 final size:20
Alignment explanation
Indices: 27083--27120 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27073 TTGAGAGTTA
*
27083 ACTTTAACCT-TTGACTTTG
1 ACTTTAACATGTTGACTTTG
27102 ACTTTAACATGTTGACTTT
1 ACTTTAACATGTTGACTTT
27121 TTCTAAAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (20 bp):
ACTTTAACATGTTGACTTTG
Found at i:27779 original size:47 final size:47
Alignment explanation
Indices: 27718--27831 Score: 165
Period size: 47 Copynumber: 2.4 Consensus size: 47
27708 AATTACAAGT
* * * *
27718 TGGTTTATCTTTATTGGATGGTAAATTCCAATTATCGAGTTACAGGC
1 TGGTTCATCCTTATTGGATGGTAAATTCCAATCACCGAGTTACAGGC
*
27765 TGGTTCATCCTTATTGGATGGTAAATTTCAATCACCGAGTTACAGGC
1 TGGTTCATCCTTATTGGATGGTAAATTCCAATCACCGAGTTACAGGC
**
27812 TAATTCATCCTTATTGGATG
1 TGGTTCATCCTTATTGGATG
27832 ATGAAACTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (47 bp):
TGGTTCATCCTTATTGGATGGTAAATTCCAATCACCGAGTTACAGGC
Found at i:36606 original size:27 final size:27
Alignment explanation
Indices: 36566--36633 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36556 TTGTAGGAAT
36566 TATAGAG--ATGATTTGTTACCATTCC
1 TATAGAGATATGATTTGTTACCATTCC
*
36591 TCTAGAGATATGATTTGTTACCATTCC
1 TATAGAGATATGATTTGTTACCATTCC
36618 TATAGAGATATGATTT
1 TATAGAGATATGATTT
36634 TGTAAATAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 6 0.15
27 33 0.85
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (27 bp):
TATAGAGATATGATTTGTTACCATTCC
Found at i:40369 original size:27 final size:27
Alignment explanation
Indices: 40335--40395 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
40325 AATTATATAG
40335 ATGATTTGTTACCATTCCTATAGAGAT
1 ATGATTTGTTACCATTCCTATAGAGAT
40362 ATGATTTGTTACCATTCCTATAGAGAT
1 ATGATTTGTTACCATTCCTATAGAGAT
40389 ATGATTT
1 ATGATTT
40396 TGTAAATAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (27 bp):
ATGATTTGTTACCATTCCTATAGAGAT
Found at i:53882 original size:96 final size:98
Alignment explanation
Indices: 53645--53911 Score: 398
Period size: 96 Copynumber: 2.7 Consensus size: 98
53635 TCCGGCATAT
* *
53645 ATGTTAAAAAAGACGGTAACTACGGACAAACTGAAGTTGTGTTCAACTTCAGTTGGCATGCTAGA
1 ATGTTAACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTTCAACTTCAGTTGGCATGCTAGA
53710 GTAATTTTCCCATTTTCATTTTCATCTTCTAGCAGAC
66 GTAATTTTCCC----TCATTTTCATCTTCTAGCAGAC
* *
53747 ATGTTAACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTT-AGGCTTCAGTTGACATGCTAG
1 ATGTTAACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTTCA-ACTTCAGTTGGCATGCTAG
*
53811 A-TCAA-TTTCCC-CATTTTCATCTTCTGGCAGAC
65 AGT-AATTTTCCCTCATTTTCATCTTCTAGCAGAC
*
53843 ATGTTGACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTTCAACTTCAGTTGGCATGCTAGA
1 ATGTTAACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTTCAACTTCAGTTGGCATGCTAGA
53908 GTAA
66 GTAA
53912 CAAGACCAAA
Statistics
Matches: 153, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
96 82 0.54
97 2 0.01
101 8 0.05
102 61 0.40
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (98 bp):
ATGTTAACAAAGACGGTGACTACGGACAAACTGAAGTTGTGTTCAACTTCAGTTGGCATGCTAGA
GTAATTTTCCCTCATTTTCATCTTCTAGCAGAC
Found at i:57523 original size:25 final size:25
Alignment explanation
Indices: 57492--57540 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
57482 TAGTTGATCT
*
57492 TCAACTATAATAGCCTAAAGTGTGA
1 TCAACTATAATACCCTAAAGTGTGA
57517 TCAACTATAATACCCTAAAGTGTG
1 TCAACTATAATACCCTAAAGTGTG
57541 CAGGGACTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (25 bp):
TCAACTATAATACCCTAAAGTGTGA
Found at i:67069 original size:19 final size:19
Alignment explanation
Indices: 67045--67084 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
67035 AGTGTAAGTG
67045 TGTGTTTTAAAATGATAAA
1 TGTGTTTTAAAATGATAAA
67064 TGTGTTTTAAAATGATAAA
1 TGTGTTTTAAAATGATAAA
67083 TG
1 TG
67085 GGAGAAGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TGTGTTTTAAAATGATAAA
Found at i:68197 original size:21 final size:21
Alignment explanation
Indices: 68171--68212 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
68161 CCAGAATGGG
*
68171 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
68192 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
68213 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:68248 original size:19 final size:19
Alignment explanation
Indices: 68223--68271 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
68213 ATATTCAAAT
68223 ATTACTGTTCAAATAGTAA
1 ATTACTGTTCAAATAGTAA
*
68242 TTTACTGTTCAAATAGTAA
1 ATTACTGTTCAAATAGTAA
*
68261 ATTACTATTCA
1 ATTACTGTTCA
68272 TAAAAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (19 bp):
ATTACTGTTCAAATAGTAA
Found at i:68383 original size:30 final size:31
Alignment explanation
Indices: 68336--68426 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
68326 AAATTTTGAA
68336 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
68365 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
68396 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
68427 CCTTAAATTG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 11 0.18
31 38 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:70352 original size:32 final size:32
Alignment explanation
Indices: 70315--70394 Score: 151
Period size: 32 Copynumber: 2.5 Consensus size: 32
70305 TTATCACAAA
*
70315 GCAATATGATCTTCGTTCAGGTTTTGCTGAAG
1 GCAATATGGTCTTCGTTCAGGTTTTGCTGAAG
70347 GCAATATGGTCTTCGTTCAGGTTTTGCTGAAG
1 GCAATATGGTCTTCGTTCAGGTTTTGCTGAAG
70379 GCAATATGGTCTTCGT
1 GCAATATGGTCTTCGT
70395 CTTCTTATAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (32 bp):
GCAATATGGTCTTCGTTCAGGTTTTGCTGAAG
Found at i:89409 original size:31 final size:33
Alignment explanation
Indices: 89341--89409 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
89331 CTTAATACTC
89341 ATTCTTGCTCCAATTAAAATGGATACGGTATGAA
1 ATTCTTGCTCCAATTAAAATGGATA-GGTATGAA
* * *
89375 ATTCTTTCTCCAATTGAAAT-GAT-GGTTTGAA
1 ATTCTTGCTCCAATTAAAATGGATAGGTATGAA
89406 ATTC
1 ATTC
89410 ATGAAATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 11 0.34
33 3 0.09
34 18 0.56
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (33 bp):
ATTCTTGCTCCAATTAAAATGGATAGGTATGAA
Found at i:91702 original size:16 final size:16
Alignment explanation
Indices: 91669--91699 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91659 TTTTCTTGAA
91669 ATTTCCAAATTATTTT
1 ATTTCCAAATTATTTT
91685 ATTTCCAAA-TATTTT
1 ATTTCCAAATTATTTT
91700 TATCTCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTCCAAATTATTTT
Found at i:94613 original size:37 final size:37
Alignment explanation
Indices: 94563--94647 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
94553 CCTGTTGTCT
94563 GTTCTTGGAGGGCCATTTTTATCGTTCTCTGTCGGCC
1 GTTCTTGGAGGGCCATTTTTATCGTTCTCTGTCGGCC
94600 GTTCTTGGAGGGCCATTTTTATCGTTCTCTGTCGGCC
1 GTTCTTGGAGGGCCATTTTTATCGTTCTCTGTCGGCC
94637 GTTCTTGGAGG
1 GTTCTTGGAGG
94648 CCTACAACAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.08, C:0.22, G:0.29, T:0.40
Consensus pattern (37 bp):
GTTCTTGGAGGGCCATTTTTATCGTTCTCTGTCGGCC
Found at i:102287 original size:12 final size:12
Alignment explanation
Indices: 102267--102298 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
102257 ATCAAAATAG
*
102267 GTTTATAGCGGC
1 GTTTTTAGCGGC
102279 GTTTTTAGCGGC
1 GTTTTTAGCGGC
102291 GTTTTTAG
1 GTTTTTAG
102299 AACAAACGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.31, T:0.44
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:102465 original size:41 final size:41
Alignment explanation
Indices: 102312--102869 Score: 561
Period size: 41 Copynumber: 13.6 Consensus size: 41
102302 AAACGAAAAT
* * * *
102312 GCCGCTAAATACTTGTACTTTAGTGGCATTGTTTTTACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTT-TTTATACAAAC
* * * *
102354 GCCGCTAAAGACT-GT-CTTTAGTGGCATATTTAGAACTAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTA-TACAAAC
* * * *
102394 GCCGCTAAATACTCATACTTTAATGGCGTTTTTAATATAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTT-ATACAAAC
* * *
102436 GCCGATAAAGACT-GTACTTTAGCGACGTTTTTATACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* *
102476 GCCGCTATAGACTCGTACTTTAGTGGTGTTTTTATACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
*
102517 GCCGCTATAA-ACTTGTACTTTAGTGGCGTTTTTATACAAAC
1 GCCGCTA-AAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * *
102558 GCCGCTATAGACTTGTTCTTTAGTGGCGTTTTTAATACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTT-ATACAAAC
* * * *
102600 GCCGCTATATATTCGTATTTTAGTGGCGTTTTTATACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * * *
102641 GCCACTAAAGACTCATACTTTAGTGGCGTTTTTATATAAAT
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * * * *
102682 GTCGCTAAAGACTCATACTTTAGTAGCGTTTTAATACAAAT
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * * *
102723 GCCGCTATAA-ACTAGTCCTTTAGTGACGTTTTTATATAAAC
1 GCCGCTA-AAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * *
102764 GCCGCTATAGACTC-TAACTTTAGTGGCATTTTTTTACAAAC
1 GCCGCTAAAGACTCGT-ACTTTAGTGGCGTTTTTATACAAAC
* ** * * *
102805 ACCGCTGTACACTCATGCTTTAGTGGCGTTTTTATACAAAC
1 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
* * *
102846 GCCGTTATAGACTCGTGCTTTAGT
1 GCCGCTAAAGACTCGTACTTTAGT
102870 TGGAGCCCCT
Statistics
Matches: 429, Mismatches: 75, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.01
40 50 0.12
41 295 0.69
42 80 0.19
43 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (41 bp):
GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTTATACAAAC
Found at i:105100 original size:64 final size:63
Alignment explanation
Indices: 105031--105254 Score: 206
Period size: 64 Copynumber: 3.5 Consensus size: 63
105021 TTATATGAAT
* *
105031 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTATTTTAA-AATAAAGACATCGAATGCAATT
1 GTGCATCGATGCATAGGTAGTGCATCGATGCACCCA--TTAATAATAAA-ACATCGAATGCAA-T
105094 C-
62 CG
* * *
105095 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATGCAATCG
1 GTGCATCGATGCATAGGTAGTGCATCGATGCA-CCCATTAATAATAAAACATCGAATGCAATCG
** ** * ** *
105159 GTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCAACAATAATACTACATCGAATACCTTTG
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCA-CCCATTAATAATAAAACATCGAATGCAATCG
* *
105223 ATGCACCGATGCATCA-GTAGTGCATCGATGCA
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCA
105255 TACCTTCATT
Statistics
Matches: 135, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
63 3 0.02
64 124 0.92
65 6 0.04
66 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCATAGGTAGTGCATCGATGCACCCATTAATAATAAAACATCGAATGCAATCG
Found at i:105500 original size:12 final size:12
Alignment explanation
Indices: 105483--105529 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
105473 ATATATGTTC
105483 ATGTGATATGAT
1 ATGTGATATGAT
105495 ATGTGATATGAT
1 ATGTGATATGAT
*
105507 ATGTGATATGAC
1 ATGTGATATGAT
*
105519 ATGTAATATGA
1 ATGTGATATGA
105530 GAACATGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:105692 original size:15 final size:15
Alignment explanation
Indices: 105674--105720 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
105664 GAGGGTATAA
105674 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
105689 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
105704 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
105719 TA
1 TA
105721 ATGGTCCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:111991 original size:64 final size:63
Alignment explanation
Indices: 111922--112145 Score: 206
Period size: 64 Copynumber: 3.5 Consensus size: 63
111912 TTATATGAAT
* *
111922 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTATTTTAA-AATAAAGACATCGAATGCAATT
1 GTGCATCGATGCATAGGTAGTGCATCGATGCACCCA--TTAATAATAAA-ACATCGAATGCAA-T
111985 C-
62 CG
* * *
111986 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATGCAATCG
1 GTGCATCGATGCATAGGTAGTGCATCGATGCA-CCCATTAATAATAAAACATCGAATGCAATCG
** ** * ** *
112050 GTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCAACAATAATACTACATCGAATACCTTTG
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCA-CCCATTAATAATAAAACATCGAATGCAATCG
* *
112114 ATGCACCGATGCATCA-GTAGTGCATCGATGCA
1 GTGCATCGATGCAT-AGGTAGTGCATCGATGCA
112146 TACCTTCATT
Statistics
Matches: 135, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
63 3 0.02
64 124 0.92
65 6 0.04
66 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCATAGGTAGTGCATCGATGCACCCATTAATAATAAAACATCGAATGCAATCG
Found at i:112472 original size:12 final size:12
Alignment explanation
Indices: 112455--112513 Score: 100
Period size: 12 Copynumber: 4.9 Consensus size: 12
112445 ATATATGTTC
112455 ATGTGATATGAT
1 ATGTGATATGAT
112467 ATGTGATATGAT
1 ATGTGATATGAT
112479 ATGTGATATGAT
1 ATGTGATATGAT
*
112491 ATGTGATATGAC
1 ATGTGATATGAT
*
112503 ATGTAATATGA
1 ATGTGATATGA
112514 GAATATGATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.39
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:112475 original size:7 final size:7
Alignment explanation
Indices: 112455--112500 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
112445 ATATATGTTC
112455 ATGTGAT
1 ATGTGAT
112462 A--TGAT
1 ATGTGAT
112467 ATGTGAT
1 ATGTGAT
112474 A--TGAT
1 ATGTGAT
112479 ATGTGAT
1 ATGTGAT
112486 A--TGAT
1 ATGTGAT
112491 ATGTGAT
1 ATGTGAT
112498 ATG
1 ATG
112501 ACATGTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
5 15 0.45
7 18 0.55
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (7 bp):
ATGTGAT
Found at i:112676 original size:15 final size:15
Alignment explanation
Indices: 112658--112719 Score: 106
Period size: 15 Copynumber: 4.1 Consensus size: 15
112648 GAGGGTATAA
112658 TAGTCATTCGGGATG
1 TAGTCATTCGGGATG
112673 TAGTCATTCGGGATG
1 TAGTCATTCGGGATG
*
112688 TAGTCCTTCGGGATG
1 TAGTCATTCGGGATG
*
112703 TAGTCCTTCGGGATG
1 TAGTCATTCGGGATG
112718 TA
1 TA
112720 ATGGTCCTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (15 bp):
TAGTCATTCGGGATG
Found at i:112732 original size:18 final size:19
Alignment explanation
Indices: 112703--112758 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 19
112693 CTTCGGGATG
*
112703 TAGTCCTTCGGGATG-TAA
1 TAGTCCTACGGGATGATAA
*
112721 TGGTCCTACGGGACATAGATAA
1 TAGTCCTACGGG--AT-GATAA
112743 TAGTCCTACGGGATGA
1 TAGTCCTACGGGATGA
112759 ATACTGAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 10 0.32
19 2 0.06
20 4 0.13
21 1 0.03
22 14 0.45
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (19 bp):
TAGTCCTACGGGATGATAA
Found at i:114449 original size:2 final size:2
Alignment explanation
Indices: 114442--114468 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
114432 TATTACGATA
114442 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
114469 ATGTAGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:115862 original size:43 final size:42
Alignment explanation
Indices: 115809--116094 Score: 301
Period size: 43 Copynumber: 6.7 Consensus size: 42
115799 TTCAATAACA
*
115809 CCGCTATAGATCT-ACTCTTTTGCGGCGTTTGTATCCAAAAATG
1 CCGCTATAGATCTGAC-CTTTTGCGGCGTTTGT-TCCAAAAACG
* * * * * * * *
115852 CCACAATAGATCTGTCATTTTGCAGCTTTTATATCCAAAAACA
1 CCGCTATAGATCTGACCTTTTGCGGCGTTTGT-TCCAAAAACG
*
115895 CCAC--TAGATCTGACCTTTTGCGGCGTTTGTATCCAAAAACG
1 CCGCTATAGATCTGACCTTTTGCGGCGTTTGT-TCCAAAAACG
115936 CCGCTATAGATCTCGACCTTTTGCGGCGTTTGTTCC-AAAACG
1 CCGCTATAGATCT-GACCTTTTGCGGCGTTTGTTCCAAAAACG
* * *
115978 CCGCTATAGATATCAACCTTTTGCGGCGTTTGTTCCAAAGACG
1 CCGCTATAGATCT-GACCTTTTGCGGCGTTTGTTCCAAAAACG
* * *
116021 CCGCGATAGATATTGACCTTTTGCGGTGTTTGTTCCAAAAACG
1 CCGCTATAGAT-CTGACCTTTTGCGGCGTTTGTTCCAAAAACG
* * *
116064 TCGCGATAGATCTTGACCTATTGCGGCGTTT
1 CCGCTATAGATC-TGACCTTTTGCGGCGTTT
116095 TTTGTTCTCA
Statistics
Matches: 208, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
41 34 0.16
42 40 0.19
43 113 0.54
44 21 0.10
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (42 bp):
CCGCTATAGATCTGACCTTTTGCGGCGTTTGTTCCAAAAACG
Found at i:115961 original size:128 final size:126
Alignment explanation
Indices: 115809--116094 Score: 310
Period size: 128 Copynumber: 2.2 Consensus size: 126
115799 TTCAATAACA
* * **
115809 CCGCTATAGATCT-ACTCTTTTGCGGCGTTTGTATCCAAAAATGCCACAATAGATCT-GTCATTT
1 CCGCTATAGATCTGAC-CTTTTGCGGCGTTTGT-TCC-AAAACGCCACAATAGATATCAACATTT
*
115872 TGCAGCTTTTATATCCAAAAACACCAC-TAGAT-CTGACCTTTTGCGGCGTTTGTATCCAAAAAC
63 TGCAGCGTTTAT-TCCAAAAACACCACATAGATACTGACCTTTTGCGGCGTTTGT-TCCAAAAAC
115935 G
126 G
* * *
115936 CCGCTATAGATCTCGACCTTTTGCGGCGTTTGTTCCAAAACGCCGCTATAGATATCAACCTTTTG
1 CCGCTATAGATCT-GACCTTTTGCGGCGTTTGTTCCAAAACGCCACAATAGATATCAACATTTTG
* * * * * * *
116001 CGGCGTTTGTTCCAAAGACGCCGCGATAGATATTGACCTTTTGCGGTGTTTGTTCCAAAAACG
65 CAGCGTTTATTCCAAAAACACCAC-ATAGATACTGACCTTTTGCGGCGTTTGTTCCAAAAACG
* * *
116064 TCGCGATAGATCTTGACCTATTGCGGCGTTT
1 CCGCTATAGATC-TGACCTTTTGCGGCGTTT
116095 TTTGTTCTCA
Statistics
Matches: 134, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
126 26 0.19
127 29 0.22
128 57 0.43
129 22 0.16
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (126 bp):
CCGCTATAGATCTGACCTTTTGCGGCGTTTGTTCCAAAACGCCACAATAGATATCAACATTTTGC
AGCGTTTATTCCAAAAACACCACATAGATACTGACCTTTTGCGGCGTTTGTTCCAAAAACG
Found at i:116088 original size:86 final size:86
Alignment explanation
Indices: 115809--116094 Score: 280
Period size: 85 Copynumber: 3.4 Consensus size: 86
115799 TTCAATAACA
* * * * * * *
115809 CCGCTATAGATC-T-ACTCTTTTGCGGCGTTTGTATCCAAAAATGCCACAATAGATCT-GTCATT
1 CCGCGATAGATCTTGAC-CTTTTGCGGCGTTTGTATCCAAAAACGCCGCGATAGATATCGACCTT
* * * *
115871 TTGCAGCTTTTATATCCAAAAACA
65 TTGCGGCGTTTGT-TCC-AAAACG
* * *
115895 CCAC--TAGATC-TGACCTTTTGCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTCGACCTTT
1 CCGCGATAGATCTTGACCTTTTGCGGCGTTTGTATCCAAAAACGCCGCGATAGATATCGACCTTT
115957 TGCGGCGTTTGTTCCAAAACG
66 TGCGGCGTTTGTTCCAAAACG
* * ** * *
115978 CCGCTATAGATATCAACCTTTTGCGGCGTTTGT-TCCAAAGACGCCGCGATAGATATTGACCTTT
1 CCGCGATAGATCTTGACCTTTTGCGGCGTTTGTATCCAAAAACGCCGCGATAGATATCGACCTTT
*
116042 TGCGGTGTTTGTTCCAAAAACG
66 TGCGGCGTTTGTTCC-AAAACG
* *
116064 TCGCGATAGATCTTGACCTATTGCGGCGTTT
1 CCGCGATAGATCTTGACCTTTTGCGGCGTTT
116095 TTTGTTCTCA
Statistics
Matches: 169, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
83 8 0.05
84 47 0.28
85 62 0.37
86 52 0.31
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (86 bp):
CCGCGATAGATCTTGACCTTTTGCGGCGTTTGTATCCAAAAACGCCGCGATAGATATCGACCTTT
TGCGGCGTTTGTTCCAAAACG
Found at i:118961 original size:16 final size:16
Alignment explanation
Indices: 118940--118972 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
118930 TAATAAATAA
118940 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
118956 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
118972 A
1 A
118973 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:119052 original size:10 final size:10
Alignment explanation
Indices: 119037--119106 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
119027 CATTTAATAA
119037 ATAAACGAAC
1 ATAAACGAAC
119047 ATAAACGAAC
1 ATAAACGAAC
119057 ----ACGAAC
1 ATAAACGAAC
119063 ATAAACGAAC
1 ATAAACGAAC
* *
119073 ATGAAC-ATAA
1 ATAAACGA-AC
*
119083 ATGAACACGAAT
1 AT-AA-ACGAAC
119095 ATAAACGAAC
1 ATAAACGAAC
119105 AT
1 AT
119107 CAACATTGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
6 6 0.13
9 1 0.02
10 31 0.66
11 3 0.06
12 5 0.11
13 1 0.02
ACGTcount: A:0.57, C:0.19, G:0.11, T:0.13
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:119062 original size:16 final size:16
Alignment explanation
Indices: 119041--119105 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
119031 TAATAAATAA
119041 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
119057 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
* *
119073 ATGAACATAAATGAAC
1 ACGAACATAAACGAAC
*
119089 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
119105 A
1 A
119106 TCAACATTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.57, C:0.20, G:0.12, T:0.11
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:123329 original size:131 final size:132
Alignment explanation
Indices: 123194--123434 Score: 297
Period size: 132 Copynumber: 1.8 Consensus size: 132
123184 GTGCCTAATG
** * * ** *
123194 TTACCACCATTTTATGTGTCTAGACCATATTAGACGTT-AAACAT-GTGTTAATATAAAAATAAG
1 TTACCACCATTTTAACTGCCTAGACAATAACAGACGTTAAAAAATGGT-TTAATATAAAAATAAG
* * * * *
123257 TGTCAAAATTATATTTAAAGTTAATTTTAAGTGTCTAAATAATTTTTCGGCCAATAGAGATGTTA
65 TATCAAAACTATATCTAAAGTTAATTTTAAGCGTCTAAAGAATTTTTCGGCCAATAGAGATGTTA
123322 GCA
130 GCA
* * * *
123325 TTACCACCATTTTAACTGCCTCGACAATAACAGATGTTAAAAAATGGTTTAATGTAAAAATAATT
1 TTACCACCATTTTAACTGCCTAGACAATAACAGACGTTAAAAAATGGTTTAATATAAAAATAAGT
**
123390 ATTTAAACTATATCTAAAGTTAATTTTAAGCGTCTAAAGAATTTT
66 ATCAAAACTATATCTAAAGTTAATTTTAAGCGTCTAAAGAATTTT
123435 ATGTTCAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
131 30 0.33
132 58 0.64
133 2 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (132 bp):
TTACCACCATTTTAACTGCCTAGACAATAACAGACGTTAAAAAATGGTTTAATATAAAAATAAGT
ATCAAAACTATATCTAAAGTTAATTTTAAGCGTCTAAAGAATTTTTCGGCCAATAGAGATGTTAG
CA
Found at i:124378 original size:14 final size:14
Alignment explanation
Indices: 124344--124386 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
124334 CTGGGTGAGC
* *
124344 GGATGTGGGGCAGGC
1 GGATGCGGGGC-GGG
124359 GGATGCGGGGCGGG
1 GGATGCGGGGCGGG
*
124373 GGATGCAGGGCGGG
1 GGATGCGGGGCGGG
124387 TAATGTCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.12, C:0.14, G:0.65, T:0.09
Consensus pattern (14 bp):
GGATGCGGGGCGGG
Found at i:124988 original size:2 final size:2
Alignment explanation
Indices: 124981--125034 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
124971 CCTACCCGAT
124981 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125023 TA TA TA TA -A TA T
1 TA TA TA TA TA TA T
125035 TTTATATTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:128790 original size:56 final size:56
Alignment explanation
Indices: 128699--128810 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
128689 GCCACGACTT
128699 CTTGACATGATCATTGGTATATTTATGTCAACTATTAGAGTTAAAATATATTGTTA
1 CTTGACATGATCATTGGTATATTTATGTCAACTATTAGAGTTAAAATATATTGTTA
**
128755 CTTGACATGATCATTGGTATATTTATGTCTTCTATTAGAGTTAAAATATATTGTTA
1 CTTGACATGATCATTGGTATATTTATGTCAACTATTAGAGTTAAAATATATTGTTA
128811 GCCTACGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (56 bp):
CTTGACATGATCATTGGTATATTTATGTCAACTATTAGAGTTAAAATATATTGTTA
Found at i:129808 original size:29 final size:29
Alignment explanation
Indices: 129766--129828 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
129756 GTTGAAAGAA
129766 ACAAGAAAAGGCAGCAATGGATGCCTTTT
1 ACAAGAAAAGGCAGCAATGGATGCCTTTT
129795 ACAAGAAAAGGCAGCAATGGATGCCTTTT
1 ACAAGAAAAGGCAGCAATGGATGCCTTTT
129824 ACAAG
1 ACAAG
129829 TTAAGCCAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (29 bp):
ACAAGAAAAGGCAGCAATGGATGCCTTTT
Found at i:129838 original size:29 final size:29
Alignment explanation
Indices: 129766--129840 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
129756 GTTGAAAGAA
*
129766 ACAAGAAAAGGCAGCAATGGATGCCTTTT
1 ACAAGAAAAGCCAGCAATGGATGCCTTTT
*
129795 ACAAGAAAAGGCAGCAATGGATGCCTTTT
1 ACAAGAAAAGCCAGCAATGGATGCCTTTT
**
129824 ACAAGTTAAGCCAGCAA
1 ACAAGAAAAGCCAGCAA
129841 GCTCAGAGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (29 bp):
ACAAGAAAAGCCAGCAATGGATGCCTTTT
Found at i:143024 original size:14 final size:14
Alignment explanation
Indices: 143005--143048 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
142995 TATTATAATC
*
143005 ATATATACAATAAA
1 ATATATAAAATAAA
143019 ATATATAAAATAAAA
1 ATATATAAAAT-AAA
*
143034 ATAATATTAAATAAA
1 AT-ATATAAAATAAA
143049 TGGTATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 10 0.38
15 8 0.31
16 8 0.31
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
ATATATAAAATAAA
Found at i:143040 original size:16 final size:15
Alignment explanation
Indices: 143005--143048 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
142995 TATTATAATC
*
143005 ATATATACAAT-AAA
1 ATATATAAAATAAAA
143019 ATATATAAAATAAAA
1 ATATATAAAATAAAA
*
143034 ATAATATTAAATAAA
1 AT-ATATAAAATAAA
143049 TGGTATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 5 0.19
16 11 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (15 bp):
ATATATAAAATAAAA
Done.