Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003134.1 Hibiscus syriacus cultivar Beakdansim tig00006573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84300

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8124--8184
22
2.9
21
85
4
79
21
34
24
19
1.96
8166--8205
21
1.9
21
84
0
53
30
37
20
12
1.89
12693--12800
50
2.1
51
80
10
123
40
12
1
45
1.52
12748--12813
20
3.1
21
74
21
66
45
9
3
42
1.51
12767--12822
23
2.5
22
83
11
69
41
7
3
48
1.48
12827--12892
17
4.2
16
70
16
57
42
9
0
48
1.35
12789--12898
48
2.3
49
81
12
138
40
8
1
50
1.43
12838--12894
30
1.9
29
96
3
105
43
7
0
49
1.29
12838--12900
26
2.3
27
84
13
76
41
6
0
52
1.27
13243--13296
24
2.2
26
83
12
69
37
1
1
59
1.19
13340--13394
9
6.2
9
76
18
53
34
0
1
63
1.05
13343--13394
17
3.0
18
78
18
65
34
0
1
63
1.06
13339--13388
25
2.0
26
88
11
77
30
0
2
68
1.01
14964--15013
3
16.7
3
100
0
100
68
0
0
32
0.90
19211--19240
5
6.0
5
92
0
51
56
0
0
43
0.99
26969--27004
2
18.0
2
100
0
72
50
0
0
50
1.00
35201--35231
16
2.0
16
93
6
55
54
0
0
45
0.99
35741--35770
2
15.0
2
100
0
60
50
0
0
50
1.00
37071--37131
21
2.8
22
74
18
65
42
3
0
54
1.17
37353--37456
46
2.4
42
79
9
111
31
6
3
57
1.43
41183--41225
12
3.8
12
81
12
54
44
18
18
18
1.87
41183--41225
22
2.0
22
90
0
68
44
18
18
18
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42106--42174
30
2.3
30
85
11
90
33
18
4
43
1.70
43726--43787
21
3.0
20
76
6
70
30
24
9
35
1.87
53933--54345
159
2.6
156
84
5
537
48
5
17
28
1.69
54164--54229
19
3.4
18
76
19
71
65
1
12
21
1.34
56999--57058
27
2.2
27
81
3
66
58
5
8
28
1.48
59791--59832
21
2.0
21
90
0
66
38
19
19
23
1.93
66608--66637
2
15.0
2
100
0
60
50
0
0
50
1.00
69420--69474
27
2.0
27
85
0
74
32
29
16
21
1.95
70082--70131
26
1.9
26
84
8
66
66
10
0
24
1.22
70120--70149
14
2.1
15
93
6
53
70
0
0
30
0.88
70611--70680
18
3.8
17
74
18
59
60
1
4
34
1.25
70589--70687
22
4.5
22
79
3
101
63
2
4
30
1.24
70604--70666
21
3.0
21
81
6
74
60
3
1
34
1.22
75505--75832
132
2.4
135
82
7
373
29
14
12
42
1.82
77195--77261
27
2.5
27
95
0
116
32
22
19
25
1.97
78973--79062
44
2.0
44
93
0
153
50
18
14
16
1.79
80930--81002
32
2.3
32
100
0
146
36
8
9
45
1.67

Tables:   1

The End!