genome.fa.s3135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003135.1 Hibiscus syriacus cultivar Beakdansim tig00006576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104402

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774--825	23	2.2	25	80	13	65	38	0	9	51	1.35
4555--4621	27	2.5	27	95	0	116	32	22	19	25	1.97
6335--6423	44	2.0	44	91	2	144	49	19	14	16	1.80
8288--8360	32	2.3	32	100	0	146	36	8	9	45	1.67
14089--14135	2	23.5	2	100	0	94	48	0	0	51	1.00
14469--14497	4	7.2	4	100	0	58	75	0	24	0	0.80
18887--18925	15	2.5	16	83	8	53	48	0	0	51	1.00
20118--20229	60	1.9	59	81	5	136	36	6	5	51	1.50
20861--20896	6	6.0	6	100	0	72	50	0	16	33	1.46
21158--21625	180	2.6	179	87	4	638	42	14	17	26	1.87
24322--24361	18	2.2	18	100	0	80	55	0	40	5	1.22
25896--25940	19	2.4	19	92	0	72	28	2	13	55	1.50
28553--29299	200	3.7	199	87	4	1049	39	14	14	32	1.85
31820--31892	33	2.2	33	90	2	112	12	0	30	57	1.35
33762--34872	196	5.8	178	81	11	923	39	14	15	29	1.87
33938--34872	196	4.7	198	90	2	1423	39	14	15	30	1.87
36440--36465	2	13.0	2	100	0	52	50	0	0	50	1.00
36736--37100	158	2.3	158	95	0	649	31	13	13	40	1.84
36880--36929	23	2.2	23	82	7	57	34	16	12	38	1.85
37028--37078	23	2.2	23	82	0	66	31	19	9	39	1.84
38076--38157	43	1.9	42	83	14	105	45	2	4	47	1.37
38414--38457	21	2.2	20	84	12	54	47	0	4	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41248--41310	31	2.0	31	84	0	81	34	12	9	42	1.76
41486--41517	2	16.0	2	100	0	64	50	0	0	50	1.00
44200--44298	10	10.3	9	79	12	90	15	28	27	29	1.96
44201--44298	19	5.1	19	79	16	87	14	28	27	29	1.95
44199--44273	29	2.5	30	89	8	118	17	26	26	29	1.97
44200--44298	29	3.4	28	84	8	101	15	28	27	29	1.96
44295--44352	5	10.8	5	78	14	62	18	51	22	6	1.70
44295--44359	22	3.0	22	100	0	130	18	49	23	9	1.76
51524--51622	10	10.3	9	79	12	90	15	28	27	29	1.96
51525--51622	19	5.1	19	79	16	87	14	28	27	29	1.95
51523--51597	29	2.5	30	89	8	118	17	26	26	29	1.97
51524--51622	29	3.4	28	84	8	101	15	28	27	29	1.96
51619--51676	5	10.8	5	78	14	62	18	51	22	6	1.70
51619--51683	22	3.0	22	100	0	130	18	49	23	9	1.76
53665--53689	2	12.5	2	100	0	50	52	0	0	48	1.00
57338--57443	3	35.3	3	98	0	203	33	0	0	66	0.99
60523--60559	2	18.5	2	100	0	74	48	0	0	51	1.00
61018--61052	16	2.1	17	89	5	54	31	20	11	37	1.88
61598--61635	19	2.0	20	94	5	69	39	10	13	36	1.79
62624--62691	32	2.2	30	87	12	102	35	22	16	26	1.94
62635--62695	32	1.9	32	96	0	113	32	22	18	26	1.97
67777--67820	21	2.1	21	91	0	70	31	18	29	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70950--70992	17	2.5	18	81	11	54	44	0	4	51	1.22
72028--72071	20	2.3	19	82	17	56	20	22	9	47	1.78
72034--72071	20	1.9	20	89	10	60	21	21	10	47	1.80
72746--72961	109	2.0	110	87	2	319	31	14	12	41	1.83
72902--73341	131	3.4	131	89	0	646	33	11	12	42	1.78
77669--77732	21	3.2	21	72	20	73	43	10	9	35	1.72
77659--77734	39	1.9	39	94	0	134	43	10	9	36	1.71
77718--78227	197	2.6	197	86	0	725	33	15	12	39	1.84
78211--78263	20	2.7	20	90	0	79	26	13	11	49	1.75
80445--80486	2	21.0	2	100	0	84	50	0	0	50	1.00
81156--81202	16	2.8	16	84	12	51	53	2	0	44	1.12
83904--83929	13	2.0	13	100	0	52	30	30	7	30	1.85
84687--84715	2	14.5	2	100	0	58	51	0	0	48	1.00
85210--85256	24	2.0	24	86	0	67	40	2	8	48	1.45
86076--86110	2	17.5	2	87	0	52	0	42	0	57	0.99
86075--86110	12	3.0	12	100	0	72	0	41	0	58	0.98
87244--87314	26	2.7	26	97	0	133	21	12	21	45	1.84
93053--93122	31	2.3	31	82	0	86	57	10	10	22	1.61
93254--93320	31	2.2	31	86	5	91	53	14	13	17	1.72
93814--93860	2	25.5	2	79	16	57	46	0	0	53	1.00
93811--93861	24	2.2	23	80	16	68	45	0	0	54	0.99
97686--98025	155	2.2	157	88	1	495	45	7	19	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99052--99114	20	3.2	20	93	0	108	36	22	19	22	1.95
99120--99214	20	4.8	20	85	1	129	40	23	16	20	1.91
99108--99214	40	2.7	40	82	7	146	40	24	15	19	1.91
99043--99214	80	2.2	79	80	13	185	39	22	16	20	1.92
99108--99234	40	3.2	39	81	6	139	39	23	15	21	1.92
99182--99272	19	4.7	19	85	5	110	38	20	12	28	1.89
99160--99273	40	2.9	38	79	8	113	38	21	14	26	1.91
99429--99467	16	2.5	15	84	8	51	28	5	0	66	1.12
100179--100232	24	2.2	24	90	0	81	22	16	20	40	1.91
100408--100442	12	2.8	13	91	8	56	80	0	20	0	0.72
100407--100445	15	2.6	15	100	0	78	76	0	23	0	0.78
100407--100446	18	2.2	18	91	8	64	75	0	25	0	0.81
103431--103491	23	2.7	23	82	5	70	29	27	24	18	1.98
103511--103861	121	2.9	121	93	0	596	36	23	13	26	1.92
103723--103758	18	2.0	18	94	0	63	33	30	22	13	1.93

Tables:   1

The End!