Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003136.1 Hibiscus syriacus cultivar Beakdansim tig00006581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56667

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2242--2302
31
1.9
32
84
15
83
34
8
6
50
1.58
2710--2757
16
3.0
16
87
0
69
22
18
20
37
1.94
3285--3339
26
2.1
26
86
6
76
34
27
1
36
1.68
7677--7722
23
2.0
24
82
4
58
47
15
19
17
1.82
10026--10074
22
2.2
23
85
10
66
53
0
12
34
1.39
10796--10847
22
2.4
22
90
6
79
40
9
0
50
1.35
11763--11807
17
2.7
16
86
6
54
62
0
2
35
1.08
13045--13311
142
1.8
143
82
7
315
38
6
8
46
1.60
13086--13342
142
1.8
141
85
6
367
38
6
8
47
1.59
15508--15536
13
2.3
13
94
5
51
24
13
6
55
1.63
17651--17680
2
15.0
2
100
0
60
50
0
0
50
1.00
17977--18030
25
2.1
26
89
3
83
81
0
14
3
0.82
17984--18059
33
2.3
34
81
2
100
80
1
13
5
0.95
23003--23081
22
3.6
22
98
0
149
32
16
13
36
1.88
23633--24403
113
6.8
113
92
2
1102
37
15
19
27
1.92
23526--24403
339
2.6
339
86
4
1158
37
15
19
26
1.92
24566--24707
39
3.6
39
88
3
207
48
9
21
20
1.78
24328--24629
121
2.5
121
80
10
314
42
14
17
25
1.87
39313--39351
6
6.5
6
87
0
51
69
2
20
7
1.26
39313--39351
18
2.2
18
90
0
60
69
2
20
7
1.26
39313--39357
18
2.6
18
85
3
56
71
2
20
6
1.20
45157--45201
22
2.0
22
87
8
65
28
0
0
71
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45460--45513
22
2.4
23
90
6
85
18
42
24
14
1.88
48382--48479
20
4.9
21
69
13
62
35
21
16
26
1.94
48423--48474
19
2.7
20
78
6
61
38
23
15
23
1.92
48423--48481
20
3.0
20
82
5
75
37
20
15
27
1.92
48445--48488
19
2.4
19
81
11
56
34
15
13
36
1.87
49235--49268
12
2.8
12
90
0
50
55
29
0
14
1.40
49392--49444
24
2.3
23
86
3
70
22
18
18
39
1.92
52052--52093
20
2.1
20
95
0
75
16
23
16
42
1.88
52154--52203
25
2.0
25
92
0
82
28
8
22
42
1.81
52285--52343
23
2.5
23
71
10
57
27
0
16
55
1.41
52563--52614
24
2.2
25
79
10
63
30
1
15
51
1.54
52582--52618
18
2.1
18
89
0
56
32
5
10
51
1.60
52574--52626
24
2.2
24
86
0
70
35
3
13
47
1.61

Tables:   1

The End!