genome.fa.s3138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003138.1 Hibiscus syriacus cultivar Beakdansim tig00006584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108414

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2641--2763	29	4.2	29	78	6	122	38	14	17	29	1.90
2641--2763	58	2.1	59	84	3	158	38	14	17	29	1.90
8142--8186	16	2.8	16	83	6	56	28	6	24	40	1.80
8300--8586	83	3.5	82	86	1	376	33	17	20	28	1.96
9436--9495	31	1.9	32	96	3	113	56	20	5	18	1.59
12068--12110	17	2.6	16	80	16	52	65	9	25	0	1.22
12602--12657	24	2.3	24	96	0	103	41	25	8	25	1.84
14955--14983	14	2.1	14	100	0	58	44	6	0	48	1.29
16450--16536	44	2.0	44	88	0	129	28	20	21	28	1.98
20013--20058	24	1.9	24	81	0	56	15	39	6	39	1.73
20012--20079	27	2.5	27	78	0	73	16	36	5	41	1.72
22048--22078	14	2.2	14	94	0	53	61	6	0	32	1.21
22563--22593	16	1.9	16	100	0	62	29	32	6	32	1.83
23472--23551	40	2.0	40	95	0	142	53	21	11	13	1.70
24847--24901	18	3.1	18	81	7	67	41	20	10	27	1.85
25171--25248	25	3.3	25	77	17	85	53	20	10	15	1.70
25175--25243	21	3.0	22	81	10	77	56	18	10	14	1.66
27219--27326	48	2.2	48	88	0	162	33	25	12	27	1.93
28395--28435	21	2.0	21	85	0	55	41	29	0	29	1.56
29963--29992	3	10.0	3	100	0	60	0	33	0	66	0.92
30330--30397	24	2.8	24	77	0	64	61	14	10	13	1.56
30614--30665	14	3.7	14	87	5	70	63	17	7	11	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30604--30661	24	2.4	24	91	0	89	63	17	6	12	1.49
31196--31274	40	2.0	40	85	9	108	75	0	7	16	1.01
31207--31322	13	8.9	12	67	21	56	73	0	8	18	1.08
31193--31362	70	2.4	69	78	13	159	72	1	8	17	1.15
31246--31300	24	2.2	26	83	6	69	74	0	10	14	1.07
31246--31358	26	4.2	26	70	21	54	72	1	8	16	1.18
31240--31310	25	2.9	24	78	21	69	71	0	12	15	1.14
31392--31434	14	2.9	15	82	3	52	74	2	9	13	1.16
31370--31572	63	3.3	61	68	23	140	69	1	6	21	1.19
31428--31472	24	1.9	23	86	4	63	75	2	4	17	1.07
31418--31493	29	2.6	28	79	10	80	73	1	5	19	1.09
31399--31539	14	10.7	13	68	17	51	74	2	7	16	1.13
31207--31473	9	29.4	9	64	19	76	71	1	7	19	1.18
31499--31550	17	3.1	17	81	10	63	78	1	13	5	1.01
31413--31545	9	14.1	9	67	14	54	75	1	6	16	1.09
31564--31637	36	2.0	38	84	5	98	60	0	5	33	1.19
31593--31654	23	2.6	24	79	5	63	62	0	3	33	1.11
33453--34786	85	15.8	85	82	5	1398	25	18	21	34	1.96
33453--34786	171	7.9	170	83	4	1486	25	18	21	34	1.96
33453--34786	423	3.2	416	83	4	1508	25	18	21	34	1.96
35609--35635	14	1.9	14	100	0	54	37	14	7	40	1.74
35913--36170	95	2.7	95	89	6	378	29	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37677--37757	39	2.1	39	97	0	153	55	4	18	20	1.61
38773--38870	25	3.9	25	75	18	87	74	1	8	16	1.11
38773--38823	22	2.2	24	86	10	70	76	0	3	19	0.94
38843--38918	11	7.1	11	67	21	54	73	0	11	14	1.09
38843--38918	21	3.6	20	73	19	66	73	0	11	14	1.09
38816--38918	32	3.3	31	77	16	106	73	0	10	14	1.14
38773--38915	5	27.8	5	67	22	57	73	0	9	16	1.12
39178--39202	12	2.1	12	100	0	50	76	0	8	16	1.02
39258--39287	2	15.0	2	100	0	60	50	0	0	50	1.00
42644--42691	21	2.3	21	96	0	87	31	33	18	16	1.94
42706--43185	42	11.4	40	84	9	382	20	18	25	35	1.95
42696--43073	147	2.6	147	90	2	602	20	17	25	35	1.95
42908--43182	126	2.2	126	93	1	469	20	17	25	36	1.94
42696--43136	147	3.0	143	83	8	518	21	17	24	36	1.95
43272--43320	6	8.2	6	100	0	98	34	32	0	32	1.58
43983--44019	6	6.2	6	96	0	56	5	10	48	35	1.61
44116--44249	21	6.4	21	74	13	123	38	23	17	20	1.93
44115--44229	42	2.7	42	93	0	203	37	23	18	20	1.94
44115--44290	42	4.2	41	81	9	187	36	24	17	21	1.94
44137--44290	63	2.4	62	83	8	202	36	25	17	20	1.94
44109--44290	21	8.7	20	72	14	120	36	23	18	21	1.95
47749--47781	17	1.9	17	88	11	50	63	0	3	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54459--54501	16	2.6	17	82	14	54	13	9	0	76	1.01
54828--54862	15	2.4	15	90	4	54	68	8	5	17	1.35
55277--55318	21	2.0	21	100	0	84	38	9	19	33	1.84
55734--55789	25	2.3	25	96	3	105	51	7	7	33	1.56
63193--63275	21	3.9	21	80	7	80	24	34	25	15	1.95
72360--72397	20	1.9	20	100	0	76	36	13	28	21	1.91
72360--72402	20	2.3	19	92	8	70	37	11	30	20	1.89
72553--72626	37	2.0	37	84	7	98	48	4	0	47	1.20
75665--75705	16	2.6	16	96	3	75	56	0	12	31	1.36
86307--86346	21	1.9	22	85	10	57	40	7	17	35	1.78
89305--89344	21	1.9	21	89	0	62	30	0	25	45	1.54
89532--89560	2	14.5	2	100	0	58	48	0	0	51	1.00
92731--92770	21	1.9	21	89	0	62	27	20	25	27	1.99
92805--92865	21	3.0	21	80	4	70	37	19	22	19	1.94
94411--94669	130	2.0	130	98	0	500	23	28	19	28	1.98
101691--101751	29	2.3	25	77	11	59	54	3	1	40	1.27
101967--102019	27	1.9	28	84	3	72	64	0	5	30	1.17
102061--102207	60	2.5	60	81	0	159	29	19	4	45	1.71
102109--102224	60	1.9	60	80	3	135	31	22	5	41	1.76
106697--106723	13	2.1	13	100	0	54	37	14	25	22	1.93

Tables:   1

The End!