genome.fa.s3139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003139.1 Hibiscus syriacus cultivar Beakdansim tig00006589_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92499

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902--1937	18	2.0	18	94	0	63	55	25	2	16	1.55
2294--2338	20	2.2	20	84	7	56	26	17	17	37	1.93
2403--2454	25	2.1	25	92	0	86	28	5	21	44	1.75
2839--2875	18	2.1	18	89	0	56	29	8	10	51	1.65
2831--2883	24	2.2	24	89	0	79	33	5	13	47	1.66
3187--3273	39	2.2	39	97	0	165	47	20	14	17	1.83
3446--3488	20	2.2	20	91	0	68	41	23	16	18	1.89
3591--3727	66	2.2	60	87	7	184	51	17	0	29	1.50
3591--3747	66	2.5	60	83	10	158	53	16	0	29	1.48
5086--5181	21	4.6	21	76	8	97	21	17	36	23	1.95
5086--5181	42	2.3	42	82	7	122	21	17	36	23	1.95
7622--7672	22	2.3	22	93	6	86	25	13	39	21	1.90
7800--7844	20	2.2	20	92	0	72	20	17	22	40	1.92
8199--8325	64	2.0	64	93	0	218	33	31	13	21	1.92
9552--9913	42	8.7	42	83	9	415	27	20	18	33	1.96
9552--9913	83	4.4	83	86	6	441	27	20	18	33	1.96
9533--9913	125	3.1	125	88	3	547	28	21	18	32	1.96
13566--13624	21	2.8	21	81	0	64	18	6	18	55	1.64
13777--14001	43	5.3	43	87	2	301	30	22	21	26	1.99
15718--15777	29	2.1	29	93	0	102	18	26	38	16	1.92
15895--15978	29	2.9	28	92	3	132	23	29	30	15	1.95
16053--16088	11	3.2	11	84	7	54	22	22	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16202--16232	15	2.1	15	93	0	53	54	6	32	6	1.51
16281--16318	9	4.2	9	83	10	51	31	0	2	65	1.06
16401--16453	28	1.9	27	88	3	79	32	1	16	49	1.57
16400--16464	27	2.3	29	82	10	82	36	1	15	46	1.55
16573--16634	29	2.2	28	88	5	90	38	0	6	54	1.26
16659--16698	21	1.9	21	94	0	71	25	2	15	57	1.50
16876--17001	30	4.4	30	73	22	94	42	1	9	46	1.46
16948--16995	22	2.1	23	92	3	80	45	2	10	41	1.50
18272--18307	18	2.0	18	88	0	54	44	0	2	52	1.15
18276--18321	23	2.0	23	87	8	67	41	0	4	54	1.20
18270--18320	22	2.5	21	80	20	63	41	0	1	56	1.10
19295--19339	14	3.4	14	79	17	60	44	17	0	37	1.49
19295--19349	25	2.4	22	85	11	67	47	14	0	38	1.45
19311--19360	21	2.3	22	80	10	59	52	8	0	40	1.31
19370--20087	49	13.3	49	76	18	650	46	11	0	40	1.44
19307--19495	60	3.2	59	85	3	281	47	10	0	41	1.42
19376--20210	109	7.6	109	89	4	921	46	12	0	40	1.44
19528--19653	60	2.1	60	97	1	236	45	13	0	40	1.49
19638--19762	60	2.1	60	96	1	234	44	13	0	40	1.49
19747--20208	60	8.1	59	86	10	667	46	12	0	40	1.42
19855--19881	10	2.7	10	100	0	54	40	18	0	40	1.51
19861--19941	24	3.3	24	65	3	72	45	14	0	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19969--20056	24	3.6	24	64	3	59	48	12	0	38	1.41
20071--20210	21	7.0	21	63	21	57	45	13	0	41	1.44
23269--23322	28	1.9	28	92	0	90	57	14	0	27	1.38
23265--23329	28	2.3	28	82	10	87	55	12	0	32	1.37
23977--24060	29	2.9	29	89	3	116	16	29	32	21	1.95
24106--24161	29	1.9	29	96	0	103	12	21	41	25	1.88
24675--24724	20	2.5	20	83	0	64	32	6	4	58	1.41
37289--37491	83	2.4	83	81	3	230	38	13	22	25	1.91
41159--41204	24	1.9	24	90	0	74	54	15	2	28	1.53
44942--45087	60	2.4	61	85	5	199	32	16	14	36	1.89
46354--46398	21	2.1	21	84	12	56	46	0	11	42	1.39
51822--51888	20	3.3	20	76	12	73	35	25	19	19	1.95
51834--51902	21	3.3	20	74	11	68	40	24	17	17	1.90
51811--51902	41	2.2	41	90	0	139	41	23	16	18	1.90
52537--52589	20	2.7	20	93	0	88	26	20	28	24	1.99
52598--52651	20	2.7	20	97	0	99	25	18	24	31	1.97
52538--52654	61	1.9	61	85	0	162	23	17	24	33	1.97
52538--52672	61	2.2	61	81	2	155	22	20	24	32	1.98
52722--52762	21	2.0	21	85	0	55	34	31	17	17	1.93
53676--53749	2	37.0	2	100	0	148	50	0	0	50	1.00
56863--56927	29	2.3	29	78	7	71	55	0	3	41	1.15
56880--56932	23	2.3	23	78	21	58	49	0	3	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59910--59974	3	20.7	3	81	9	76	60	1	0	38	1.07
59910--59972	16	3.8	16	80	12	72	60	1	0	38	1.07
59910--59974	19	3.4	18	83	8	76	60	1	0	38	1.07
59915--59974	22	2.7	22	92	2	93	60	1	0	38	1.07
59920--59985	19	3.3	19	81	8	78	60	3	0	36	1.12
61241--61271	14	2.2	14	94	0	53	64	0	0	35	0.94
61314--61362	24	2.0	24	84	7	64	51	0	2	46	1.12
61398--61490	32	2.8	32	79	6	80	47	6	2	44	1.41
62719--62751	17	2.0	17	88	5	50	33	42	3	21	1.68
66450--66480	6	5.2	6	92	0	53	32	0	48	19	1.49
71806--71878	30	2.4	30	93	0	119	36	10	31	20	1.87
73223--73295	30	2.4	30	93	0	119	36	10	31	20	1.87
80129--80186	18	3.4	18	79	13	77	62	0	5	32	1.18
80137--80201	15	4.1	15	81	11	76	58	0	6	35	1.23
80145--80212	16	4.2	16	78	16	77	54	0	4	41	1.20
80130--80204	33	2.3	33	100	0	150	58	0	5	36	1.21
92449--92485	15	2.4	16	86	9	58	43	0	0	56	0.99

Tables:   1

The End!