genome.fa.s3140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003140.1 Hibiscus syriacus cultivar Beakdansim tig00006601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75318

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3508--3532	13	1.9	13	100	0	50	32	8	4	56	1.47
7505--7538	17	2.0	17	94	0	59	26	35	23	14	1.94
8955--9266	96	3.1	101	90	6	478	26	13	22	37	1.91
11292--11566	135	2.0	135	95	0	496	23	14	27	34	1.94
12914--12947	17	2.0	17	88	0	50	26	8	2	61	1.40
21636--21679	22	1.9	23	90	9	72	38	13	4	43	1.65
21646--21693	22	2.1	22	84	7	60	39	12	2	45	1.54
25824--25855	16	2.0	16	100	0	64	50	12	6	31	1.65
30203--30273	24	3.0	24	85	2	99	29	25	25	19	1.99
37074--37134	31	1.9	32	84	15	83	34	8	6	50	1.58
37546--37593	16	3.0	16	87	0	69	22	18	20	37	1.94
38123--38177	26	2.1	26	86	6	76	34	27	1	36	1.68
44810--44859	22	2.2	24	82	13	70	56	0	10	34	1.33
45583--45635	23	2.4	22	81	9	63	39	13	0	47	1.43
47856--48113	143	1.8	141	84	5	358	37	6	9	46	1.62
48588--48630	20	2.0	21	86	8	61	30	9	0	60	1.28
50277--50305	13	2.3	13	94	5	51	24	13	6	55	1.63
52417--52478	2	31.0	2	100	0	124	50	0	0	50	1.00
52776--52860	21	3.8	23	80	10	86	82	2	11	3	0.89
52783--52860	22	3.5	22	82	7	86	83	2	10	3	0.87
52787--52851	15	4.1	15	78	9	67	86	3	6	4	0.79
57803--57859	22	2.6	22	97	0	105	33	15	14	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58410--58700	113	2.6	113	93	1	494	38	14	19	27	1.91
59489--59548	13	4.2	13	73	19	57	16	45	21	16	1.86
59467--59543	18	4.6	18	78	15	101	16	49	20	12	1.79
59471--59548	31	2.5	31	91	0	138	16	46	21	15	1.84
59525--59571	15	3.3	14	80	11	51	17	36	23	23	1.95
60866--60900	18	1.9	18	88	0	52	54	0	17	28	1.43
63294--64001	225	3.1	224	88	3	987	37	15	18	29	1.92
63294--64001	113	6.3	113	87	3	962	37	15	18	29	1.92
63917--64225	121	2.6	123	79	10	327	41	15	17	25	1.89
64162--64303	39	3.6	39	88	3	207	48	9	21	20	1.78
74707--74751	13	2.9	16	75	21	51	44	0	0	55	0.99
74881--74905	3	8.3	3	100	0	50	32	0	0	68	0.90

Tables:   1

The End!