genome.fa.s3141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003141.1 Hibiscus syriacus cultivar Beakdansim tig00006606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66115

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8247--8283	19	2.0	18	89	5	56	78	5	10	5	1.08
10783--10844	4	15.0	4	75	24	58	69	0	0	30	0.89
10785--10840	12	4.8	12	87	12	82	69	0	0	30	0.89
10776--10844	20	3.0	25	78	21	73	69	0	0	30	0.89
10892--11161	37	7.3	37	75	12	207	41	9	5	42	1.62
10919--11150	73	3.1	72	77	14	215	42	9	5	42	1.60
10932--11149	110	2.0	109	82	11	266	41	9	5	43	1.62
10899--11150	75	3.4	73	77	12	205	42	9	6	41	1.64
10892--11161	110	2.4	108	77	13	262	41	9	5	42	1.62
14256--14290	2	17.5	2	100	0	70	48	0	0	51	1.00
14829--15163	114	2.9	114	77	10	335	26	22	16	34	1.95
16366--16432	20	3.3	20	71	20	59	8	14	0	76	1.02
22697--22854	63	2.5	64	81	7	162	35	22	18	23	1.96
23415--23480	22	3.2	21	81	8	75	13	19	36	30	1.91
26159--26746	266	2.2	255	86	8	781	28	11	19	41	1.86
28334--28454	43	2.8	43	76	0	134	28	19	22	30	1.98
28568--28726	60	3.0	49	73	22	169	42	20	13	23	1.87
32466--32514	24	2.1	22	85	7	62	55	2	2	40	1.23
33918--34003	3	29.0	3	82	2	102	63	0	3	32	1.11
33920--34017	12	8.9	11	75	18	55	64	0	5	30	1.15
34251--34914	114	5.8	114	92	1	1057	28	19	14	37	1.91
34251--34914	227	2.9	227	92	1	1098	28	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34253--34889	341	1.9	340	94	1	1141	28	19	13	37	1.91
35470--35668	83	2.4	83	98	0	380	36	22	13	28	1.91
35618--35890	52	5.2	52	91	2	433	37	21	14	26	1.92
36514--36551	16	2.4	16	82	8	51	57	7	5	28	1.49
36869--36930	1	62.0	1	77	0	52	0	12	0	87	0.55
36869--36930	25	2.5	25	85	14	92	0	12	0	87	0.55
36869--36933	31	2.2	31	84	10	84	0	13	0	86	0.58
46525--46559	18	1.9	18	88	11	54	65	2	0	31	1.07
48689--48771	3	28.0	3	81	2	96	63	0	3	32	1.11
48689--48785	12	8.8	11	74	18	53	63	0	5	30	1.16
55673--55790	29	4.1	29	98	0	227	14	32	36	16	1.89
55783--55946	81	2.0	81	98	0	319	26	17	37	18	1.93
55953--56002	20	2.5	20	100	0	100	18	16	44	22	1.87
56500--56543	21	2.1	21	91	0	70	29	0	15	54	1.42
56520--56582	28	2.2	30	91	5	103	31	0	11	57	1.34
57087--57131	21	2.2	21	84	4	56	35	0	8	55	1.31
60325--60729	26	16.2	26	78	13	320	43	2	9	43	1.50
60470--60721	98	2.5	104	83	13	321	45	2	8	43	1.48
60270--60689	124	3.4	124	97	2	810	43	2	10	43	1.50
60475--60781	105	3.0	103	83	11	325	43	2	8	45	1.46
60328--60779	14	33.9	14	69	19	154	43	2	9	44	1.49
63154--63184	15	2.1	14	94	5	53	54	6	0	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63159--63205	16	3.0	16	84	9	53	59	10	0	29	1.31
63366--63494	42	3.0	43	80	13	126	48	12	0	38	1.41
63655--63707	21	2.5	21	96	0	97	1	35	0	62	1.06
63678--63741	17	3.9	16	70	13	58	3	35	4	56	1.36
63851--63906	27	2.1	27	100	0	112	25	21	25	28	1.99
63973--64081	29	3.8	29	92	2	175	22	31	31	15	1.95
64146--64180	13	2.8	13	95	4	63	14	37	17	31	1.89
64506--64581	31	2.5	31	88	0	107	27	9	15	47	1.76
64544--64768	111	2.0	112	91	5	364	28	15	12	44	1.82
64576--64796	111	2.0	109	85	6	302	30	14	10	43	1.79
65455--65498	22	2.0	21	86	4	61	36	2	0	61	1.09

Tables:   1

The End!