genome.fa.s3143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003143.1 Hibiscus syriacus cultivar Beakdansim tig00006614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131909

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681--714	6	5.7	6	92	0	50	14	5	0	79	0.91
1215--1270	20	2.8	21	78	7	64	32	30	12	25	1.92
1296--1428	39	3.4	38	79	13	162	40	23	16	19	1.91
1318--1423	20	5.3	20	73	17	96	41	23	15	19	1.89
1316--1434	40	3.0	39	80	10	152	42	22	15	18	1.88
1329--1434	20	5.3	20	75	10	110	42	21	16	19	1.89
1547--1586	21	1.9	21	89	0	62	20	45	15	20	1.86
1828--1862	12	3.0	12	87	8	54	5	8	14	71	1.29
3622--3661	21	2.0	20	85	5	53	15	7	35	42	1.75
5447--5592	67	2.2	65	86	4	195	30	0	17	50	1.51
5675--5713	20	2.0	20	84	0	51	15	20	23	41	1.90
5926--6012	39	2.2	39	93	0	147	17	14	20	47	1.83
6315--6367	24	2.2	24	89	0	79	47	13	1	37	1.54
7152--7187	18	2.0	18	94	0	63	16	2	25	55	1.55
10400--10510	20	5.6	19	78	7	114	20	15	25	38	1.92
14359--14405	20	2.3	20	96	0	85	31	23	29	14	1.95
14440--14482	22	1.9	23	95	4	79	20	23	30	25	1.99
14426--14524	21	4.8	20	84	13	110	22	21	33	23	1.97
14604--14664	29	2.0	31	87	9	90	44	16	4	34	1.69
14775--14814	21	1.9	21	89	0	62	50	10	10	30	1.69
16408--16438	14	2.1	15	94	5	55	3	32	0	64	1.09
17805--17899	20	4.7	20	83	5	102	33	24	24	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921--18018	21	4.7	21	80	10	103	22	19	34	23	1.96
18098--18155	30	2.0	29	90	10	91	44	17	5	32	1.70
18098--18157	29	2.0	30	93	6	104	43	16	6	33	1.74
23284--23361	41	1.9	41	83	0	102	25	17	7	48	1.74
25252--25279	12	2.3	12	100	0	56	50	0	0	50	1.00
28892--28962	31	2.3	31	87	0	97	36	21	4	38	1.73
28913--28973	31	2.0	31	96	3	115	34	22	6	36	1.81
31985--32025	21	2.1	19	86	9	55	65	0	7	26	1.18
33197--34242	105	10.0	105	91	3	1605	21	18	26	33	1.96
33197--34242	309	3.3	313	91	4	1619	21	18	26	33	1.96
34988--35146	67	2.4	67	89	4	241	36	11	20	32	1.88
35021--35292	36	7.9	35	70	18	178	37	13	21	27	1.91
35091--35274	101	1.8	100	89	3	289	38	12	21	27	1.89
35735--35770	18	2.0	18	88	0	54	41	30	8	19	1.81
36185--36255	22	3.2	22	87	0	106	29	12	22	35	1.91
36913--36984	8	9.1	7	75	19	54	0	15	6	77	0.96
36907--36952	16	2.8	17	80	6	51	0	17	8	73	1.07
36938--36990	17	3.2	16	79	10	54	0	13	7	79	0.93
40178--40212	14	2.3	16	90	9	56	68	0	8	22	1.16
43231--43332	31	3.3	31	86	5	134	35	12	15	36	1.86
45227--45274	22	2.3	22	89	10	75	72	0	0	27	0.84
45995--46046	19	2.8	19	79	2	61	46	0	1	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52461--52520	19	3.2	19	70	0	57	60	3	11	25	1.47
52825--52882	28	2.2	26	77	14	64	56	8	5	29	1.51
59466--59707	128	1.9	129	90	2	389	39	7	8	45	1.61
64904--64957	28	2.0	26	82	13	65	37	0	5	57	1.22
65944--65986	21	2.0	21	86	0	59	30	0	11	58	1.34
66566--66614	22	2.3	21	78	3	53	34	10	28	26	1.89
67436--67523	42	2.0	43	93	4	151	35	5	32	26	1.80
67443--67534	42	2.1	43	86	4	123	34	7	34	22	1.83
68189--68264	6	13.5	6	98	1	117	28	53	17	0	1.43
68748--68780	6	5.5	6	100	0	66	0	15	51	33	1.43
68858--68956	20	4.8	19	78	14	90	21	18	26	34	1.96
68860--68956	42	2.3	42	90	0	158	20	18	25	35	1.95
70156--70188	16	2.0	17	88	5	50	63	0	0	36	0.95
71579--71632	22	2.5	22	93	0	90	29	20	12	37	1.90
72658--72685	2	14.0	2	100	0	56	50	0	0	50	1.00
74376--74403	3	9.3	3	100	0	56	67	0	0	32	0.91
78574--78643	11	6.0	11	70	23	54	62	4	4	28	1.33
80003--80069	2	33.5	2	100	0	134	50	0	0	49	1.00
80067--80119	3	17.3	3	79	11	54	60	0	1	37	1.08
80001--80119	22	5.1	23	78	16	90	54	0	0	44	1.05
80027--80118	31	3.1	28	82	16	82	55	0	1	43	1.07
80254--80480	120	1.9	120	96	0	418	34	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80374--80933	76	7.4	76	98	0	1084	36	21	20	22	1.96
82001--82156	54	2.9	53	90	1	240	23	22	16	37	1.93
83030--83199	74	2.3	76	84	3	220	30	20	15	34	1.93
84300--84527	114	2.0	114	88	0	339	31	19	15	33	1.93
91469--91538	34	2.1	32	89	5	104	21	31	15	31	1.95
91821--91862	21	2.0	21	95	0	75	26	28	21	23	1.99
91968--92034	19	3.5	19	91	0	89	35	13	10	40	1.79
92100--92190	31	3.0	31	96	3	168	42	17	6	32	1.75
92416--92492	24	3.3	23	77	8	68	57	1	1	40	1.15
94757--94808	3	17.0	3	78	11	52	59	0	1	38	1.08
94735--94807	37	2.0	36	82	12	87	56	0	1	42	1.08
94735--94804	28	2.6	25	82	13	68	55	0	1	42	1.08
94863--94907	16	2.8	17	80	10	58	60	0	0	40	0.97
94885--94935	14	3.7	13	80	17	50	50	0	3	45	1.20
94886--94945	27	2.2	28	82	8	70	45	1	3	50	1.28
96758--96782	3	8.3	3	100	0	50	68	0	0	32	0.90
97450--97515	29	2.3	29	87	10	107	18	31	31	18	1.95
97567--97604	20	1.9	20	88	0	58	15	7	50	26	1.72
97593--97630	20	1.9	20	94	0	67	15	13	50	21	1.78
98161--98204	21	2.1	21	91	0	70	29	0	15	54	1.42
98181--98240	28	2.2	27	93	3	102	31	0	11	56	1.35
98203--98312	47	2.4	45	82	10	136	41	0	8	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98745--98789	21	2.2	21	84	4	56	35	0	8	55	1.31
99050--99108	26	2.3	25	75	18	66	47	8	3	40	1.51
101971--102444	26	19.1	26	75	12	352	43	2	9	44	1.49
101971--102428	124	3.7	124	96	0	823	43	2	9	44	1.49
102397--102470	38	1.9	38	83	5	96	45	4	5	44	1.45
102652--102684	17	1.9	17	93	0	57	36	6	12	45	1.66
102598--102677	24	3.3	23	71	21	67	38	3	8	48	1.52
104835--104865	15	2.1	14	94	5	53	54	6	0	38	1.26
105041--105143	46	2.2	47	84	10	131	48	12	0	38	1.41
105706--105809	29	3.6	29	90	0	154	21	31	30	16	1.95
105816--105854	9	4.1	9	81	12	51	12	17	30	38	1.88
105816--105854	20	2.0	20	94	0	69	12	17	30	38	1.88
116452--116485	2	17.0	2	100	0	68	50	0	0	50	1.00
116697--116748	21	2.5	21	80	0	68	36	7	21	34	1.82
116718--116763	15	3.1	15	75	6	58	41	6	19	32	1.77
116772--116805	14	2.4	14	90	0	50	38	11	14	35	1.83
117107--117169	23	2.7	23	80	5	63	46	1	1	50	1.20
117145--117197	20	2.7	20	75	16	56	49	1	0	49	1.12
117153--117257	29	3.6	29	78	18	94	53	1	0	44	1.11
117270--117313	22	2.0	23	86	4	63	54	0	0	45	0.99
117153--117315	54	2.9	58	75	17	146	52	1	0	46	1.13
117507--117616	42	2.6	43	92	1	177	55	17	9	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125890--126007	37	3.3	36	85	8	161	44	20	2	32	1.65
125893--126001	34	3.1	35	88	6	150	44	20	2	32	1.65
130483--130626	32	4.2	33	79	15	152	40	18	6	34	1.77

Tables:   1

The End!