Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003144.1 Hibiscus syriacus cultivar Beakdansim tig00006615_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57632

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1424--1462
20
2.0
19
90
5
60
25
0
0
74
0.82
1714--1766
21
2.5
22
93
3
90
18
43
22
15
1.87
4067--4122
19
2.8
20
78
5
69
39
23
16
21
1.92
4026--4125
20
5.0
20
71
11
89
35
22
16
27
1.94
4882--4915
12
2.8
12
90
0
50
55
29
0
14
1.40
5041--5094
24
2.2
24
93
0
90
20
18
20
40
1.91
7692--7729
20
1.9
20
100
0
76
15
23
21
39
1.92
7790--7839
25
2.0
25
92
0
82
28
8
22
42
1.81
7921--7979
23
2.5
23
71
10
57
27
0
16
55
1.41
8207--8258
24
2.2
25
79
10
63
30
1
15
51
1.54
8226--8262
18
2.1
18
89
0
56
32
5
10
51
1.60
8218--8270
24
2.2
24
86
0
70
35
3
13
47
1.61
11015--11064
21
2.4
21
89
0
82
34
32
16
18
1.92
12743--12785
20
2.2
20
91
4
70
11
18
25
44
1.84
13219--13322
20
5.3
19
77
8
91
22
15
23
39
1.91
15261--15308
19
2.5
19
83
6
62
16
29
29
25
1.97
15371--15464
30
3.2
30
83
3
118
28
2
24
44
1.65
16152--16245
31
3.0
31
76
14
95
36
24
19
20
1.95
19316--19368
2
26.0
2
83
11
63
49
5
0
45
1.26
20164--20257
31
3.0
31
92
3
145
37
23
19
20
1.94
24173--24266
31
3.0
31
81
3
91
37
24
18
20
1.94
25800--25860
24
2.5
24
81
0
77
29
14
16
39
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26843--26909
34
1.9
34
82
14
84
20
11
19
47
1.81
30258--30299
14
3.0
14
92
0
66
19
2
9
69
1.28
32837--32894
20
2.8
21
68
5
55
34
24
17
24
1.96
46441--46465
11
2.3
11
100
0
50
40
8
8
44
1.63
46352--46534
73
2.5
73
83
7
208
46
3
5
44
1.44
46524--46683
32
5.0
32
72
18
109
46
2
6
45
1.42
46718--46751
15
2.3
15
90
5
52
23
2
0
73
0.97
50525--50642
58
2.1
55
80
12
125
33
3
4
58
1.34
52178--52221
16
2.8
16
100
0
88
22
6
40
29
1.80
54902--54949
15
3.1
14
78
18
51
83
6
10
0
0.81
54887--54959
29
2.5
29
78
10
78
76
6
16
0
0.99
54896--54949
7
7.4
7
78
15
56
83
5
11
0
0.80
55537--55580
22
2.0
22
91
8
72
38
22
11
27
1.88
56530--56660
35
3.7
36
79
9
151
26
20
13
38
1.90
57422--57632
104
2.0
105
89
2
327
35
26
16
21
1.94

Tables:   1

The End!