genome.fa.s3145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003145.1 Hibiscus syriacus cultivar Beakdansim tig00006617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79030

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4276--4301	13	2.0	13	100	0	52	23	0	0	76	0.78
5525--5558	16	2.1	17	88	5	52	41	17	2	38	1.65
6211--6272	22	2.8	22	95	0	106	29	24	17	29	1.97
7142--7195	21	2.6	21	75	0	54	29	25	11	33	1.91
9412--9493	15	5.4	15	79	5	76	37	10	20	30	1.87
9625--9745	23	5.2	23	87	1	161	21	17	23	37	1.94
9692--9756	23	2.8	23	85	2	58	20	15	21	43	1.88
15023--15067	15	3.0	15	78	9	56	33	0	15	51	1.44
15024--15097	30	2.5	28	82	8	76	31	2	18	47	1.63
15470--15514	23	1.9	24	95	4	83	26	22	17	33	1.96
15471--15538	24	2.9	24	84	4	77	25	26	19	29	1.98
17096--17208	60	1.9	60	81	3	138	25	23	24	26	2.00
20801--20939	60	2.3	60	81	7	149	34	4	24	36	1.75
21434--21728	21	14.0	21	79	11	141	22	19	21	37	1.95
21440--21611	42	4.1	41	82	8	188	20	19	23	36	1.95
21459--21728	63	4.3	61	80	10	260	22	19	20	37	1.94
21480--21721	42	5.7	42	83	8	253	21	19	19	39	1.93
22441--22512	21	3.4	21	74	14	85	37	22	19	20	1.94
22437--22568	42	3.2	42	94	2	232	34	23	21	21	1.97
22462--22568	21	5.2	21	70	13	87	32	25	21	20	1.97
22622--22929	21	14.1	21	68	18	98	32	20	22	23	1.98
22544--22950	111	3.7	111	94	0	706	31	20	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22766--22937	90	1.9	89	86	9	242	32	21	22	23	1.98
33676--33734	30	2.0	30	86	6	84	37	15	16	30	1.90
39509--39559	2	25.5	2	100	0	102	50	0	0	49	1.00
40019--40201	75	2.4	75	84	1	242	41	12	13	33	1.81
40035--40348	173	1.8	173	86	2	461	39	13	13	34	1.83
40544--40617	38	1.9	38	91	0	121	39	10	13	36	1.80
40818--41339	108	4.7	108	76	8	422	33	14	12	38	1.84
40962--41421	226	2.0	226	86	0	643	32	15	12	39	1.85
42029--42064	6	6.0	6	100	0	72	50	0	33	16	1.46
48571--48673	51	2.0	51	92	5	174	37	10	8	42	1.71
50766--50873	33	3.3	33	85	0	135	18	20	25	36	1.95
50788--50872	27	2.9	28	82	10	91	17	22	22	37	1.94
50832--50906	39	1.9	39	83	0	96	20	18	26	34	1.95
52346--52420	2	37.5	2	100	0	150	49	0	0	50	1.00
62897--63032	64	2.1	65	85	6	179	27	22	18	30	1.97
64935--64974	21	1.9	21	89	0	62	55	7	7	30	1.56
68820--68938	44	2.7	44	76	8	118	23	27	22	26	2.00
68820--68916	23	4.3	23	84	5	117	24	25	23	25	2.00
71198--71231	12	2.7	13	86	9	52	41	11	0	47	1.40

Tables:   1

The End!