genome.fa.s3147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003147.1 Hibiscus syriacus cultivar Beakdansim tig00006621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118292

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4661--4719	18	3.3	18	75	0	64	25	18	27	28	1.98
7419--7450	15	2.1	15	100	0	64	21	21	6	50	1.71
8003--8042	20	2.0	21	85	5	55	25	17	10	47	1.78
10124--10279	65	2.4	65	83	4	181	31	20	19	28	1.97
12219--12257	20	1.9	20	84	5	51	30	15	7	46	1.74
13189--13251	2	31.5	2	86	0	90	46	3	3	47	1.34
14278--14319	20	2.3	18	80	15	50	35	14	30	19	1.91
15283--15311	2	14.5	2	100	0	58	48	0	0	51	1.00
15957--16003	18	2.6	19	78	18	55	65	8	0	25	1.20
16047--16079	2	17.5	2	87	12	52	54	0	0	45	0.99
16156--16196	18	2.3	19	80	20	52	68	9	0	21	1.18
23230--23280	10	5.1	10	85	0	75	9	11	19	58	1.60
25921--25968	16	3.0	16	96	0	87	39	16	6	37	1.74
28995--29046	18	3.0	18	69	11	54	50	3	3	42	1.39
33482--33777	41	7.2	41	66	17	155	26	25	19	29	1.99
33436--33806	124	3.0	124	96	0	688	25	24	20	29	1.99
33772--33971	21	9.8	21	69	20	129	22	18	25	35	1.96
33773--33841	36	1.9	36	100	0	138	21	20	28	28	1.98
33778--33967	42	4.7	41	87	7	241	22	17	25	35	1.95
34065--34097	10	3.0	11	91	8	50	27	54	18	0	1.44
34737--34778	6	7.5	6	92	7	63	0	16	52	30	1.44
34869--35005	19	6.7	20	75	12	100	33	23	21	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34872--34991	21	5.8	19	74	14	69	34	25	20	20	1.97
34872--34989	42	2.8	40	82	7	119	33	25	21	20	1.97
34937--35005	23	3.3	23	76	15	78	36	21	21	20	1.95
34869--34997	63	2.1	61	88	2	195	32	23	21	22	1.98
34925--35005	44	1.9	40	87	9	117	33	22	23	20	1.97
35001--35053	21	2.5	21	93	0	88	16	20	32	30	1.95
37840--37907	31	2.2	31	86	0	91	44	10	4	41	1.58
38258--38303	2	23.0	2	100	0	92	50	0	0	50	1.00
44869--44903	4	8.8	4	100	0	70	25	22	0	51	1.48
44901--44939	2	19.5	2	100	0	78	48	0	0	51	1.00
54068--54147	23	3.7	22	83	9	94	23	32	25	18	1.97
54068--54128	23	2.7	23	92	2	97	22	32	24	19	1.97
67113--67152	21	2.0	20	90	5	62	27	7	15	50	1.70
67684--67765	36	2.2	36	80	6	85	54	12	1	31	1.45
67761--67799	17	2.4	17	91	4	62	43	2	2	51	1.29
71485--71523	19	2.1	19	85	9	53	43	0	0	56	0.99
72764--72816	3	17.7	3	100	0	106	33	0	0	66	0.92
82513--82629	21	5.6	21	92	2	164	41	20	22	15	1.89
82870--82910	6	6.8	6	89	10	66	17	17	17	48	1.81
85549--85652	22	4.6	23	75	12	108	75	0	17	6	1.00
85529--85585	9	6.2	9	78	15	55	82	1	12	3	0.87
85537--85594	9	6.8	9	79	15	61	82	0	12	5	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85529--85652	10	11.6	10	72	17	81	76	0	16	5	1.02
87891--87968	23	3.4	22	77	20	79	82	2	11	3	0.91
87891--87969	21	3.7	20	78	11	68	82	2	11	3	0.90
87901--87968	9	7.9	9	75	15	54	80	2	13	2	0.93
87900--87968	13	5.3	13	74	11	61	81	2	13	2	0.92
89703--90957	54	23.7	53	83	5	1458	34	20	24	21	1.97
89703--90957	107	11.8	108	86	4	1582	34	20	24	21	1.97
90978--91121	55	2.6	55	96	0	261	34	16	20	28	1.95
90975--91159	55	3.4	55	88	4	196	32	17	19	29	1.95
94939--94990	22	2.4	22	96	0	95	50	15	11	23	1.76
95076--95234	5	32.4	5	79	15	156	79	0	17	2	0.83
95076--95234	39	3.9	42	76	20	117	79	0	17	2	0.83
95076--95242	48	3.6	45	78	18	159	80	0	17	2	0.82
95075--95242	43	4.0	42	73	24	133	80	0	17	2	0.82
96740--96870	51	2.5	52	82	1	156	41	19	16	22	1.90
98238--98292	20	2.8	20	72	10	58	30	20	21	27	1.98
98153--98658	119	4.3	119	92	0	780	34	16	17	31	1.92
98357--98405	20	2.5	20	89	0	71	34	24	12	28	1.91
98357--98412	20	2.8	20	81	5	69	35	21	16	26	1.94
98476--98530	20	2.8	20	82	0	74	30	21	18	29	1.97
98791--98854	3	22.0	3	84	6	87	35	3	0	60	1.12
98801--98855	20	2.8	20	88	0	83	38	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102638--102707	29	2.3	31	76	9	74	51	1	4	42	1.30
103803--103846	21	2.1	21	86	0	61	43	20	4	31	1.72
104095--104143	24	2.0	24	84	7	64	44	4	4	46	1.41
104358--104399	22	1.9	22	90	9	68	54	7	4	33	1.49
105506--105594	21	4.1	21	82	5	115	17	21	25	34	1.96
105492--105594	44	2.5	42	84	9	138	19	21	23	35	1.96
105702--106048	42	8.3	42	94	0	586	36	23	19	20	1.95
105702--106116	21	19.8	21	68	18	109	35	24	19	20	1.95
106788--106830	14	3.0	15	83	13	63	11	11	13	62	1.54
107012--107052	19	2.1	20	90	4	66	12	7	17	63	1.50
107019--107060	10	4.3	10	84	6	59	9	4	16	69	1.33
115556--115630	36	2.1	36	85	5	98	46	1	4	48	1.29
116867--117045	91	2.0	89	91	4	288	40	12	6	40	1.68
116893--117031	31	4.6	30	66	16	81	42	13	6	37	1.70
117121--117206	31	2.7	31	81	3	100	40	11	10	37	1.76
117137--117206	33	2.2	31	84	5	86	42	12	8	35	1.74

Tables:   1

The End!