genome.fa.s3149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003149.1 Hibiscus syriacus cultivar Beakdansim tig00006624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61772

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11038--11097	17	3.5	17	73	13	52	55	3	0	41	1.16
11613--11652	21	1.9	21	84	0	53	47	20	0	32	1.50
16512--16708	71	3.0	62	84	12	277	20	18	25	35	1.96
16543--16685	71	2.0	71	100	0	286	19	18	26	35	1.95
17316--17343	5	5.6	5	100	0	56	0	39	21	39	1.54
17340--17365	6	4.3	6	100	0	52	0	19	46	34	1.50
19992--20123	60	2.2	59	82	1	147	33	21	3	42	1.68
20291--20457	60	2.8	60	77	7	160	46	4	17	30	1.69
20286--20474	60	3.2	58	74	7	155	47	4	17	30	1.68
20493--20520	14	2.0	14	100	0	56	50	0	14	35	1.43
22019--22100	41	2.0	41	92	0	137	20	21	8	48	1.76
25844--25889	20	2.3	20	85	3	58	36	8	23	30	1.85
25918--25972	20	2.8	20	86	2	76	41	9	9	40	1.68
25918--25971	19	2.8	19	80	2	72	42	9	9	38	1.69
28591--28698	32	3.4	32	85	2	130	51	8	0	38	1.38
29310--29407	21	4.8	20	76	10	74	37	21	19	21	1.94
29375--29603	20	11.4	20	83	5	248	36	25	17	19	1.94
30295--30341	24	2.0	24	87	8	69	25	14	21	38	1.92
32835--33057	53	4.2	52	93	1	349	45	17	21	15	1.85
32835--33057	19	12.7	19	74	19	216	45	17	21	15	1.85
32829--32999	86	2.0	84	83	13	215	45	17	23	14	1.85
32821--33000	33	5.2	33	78	16	147	46	17	22	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32888--33051	33	4.8	33	72	16	136	45	17	22	14	1.84
33047--33163	53	2.2	53	98	1	227	13	23	17	44	1.85
33066--33163	19	5.4	19	84	13	143	14	22	17	45	1.84
33270--33306	14	2.6	14	91	0	65	45	21	0	32	1.52
35228--35400	19	9.6	19	76	12	150	45	23	20	10	1.83
35322--35378	14	3.7	14	75	20	51	43	22	22	10	1.84
35303--35395	33	2.8	33	95	0	168	46	21	21	10	1.81
35262--35400	52	2.7	52	74	8	147	46	23	21	9	1.80
35396--35486	33	2.7	34	83	5	114	9	16	25	48	1.77
35534--36000	92	5.1	93	97	1	886	46	18	12	22	1.83
35534--36000	185	2.5	185	97	1	884	46	18	12	22	1.83
37683--37779	20	5.2	20	72	18	100	46	17	24	11	1.81
37681--37745	21	3.1	21	82	4	96	47	15	26	10	1.78
37730--37786	14	3.7	14	75	20	60	43	22	24	8	1.81
37681--37803	33	3.5	33	90	8	165	46	18	24	10	1.81
37831--37922	42	2.3	39	85	7	121	15	20	17	46	1.84
37831--37922	21	4.6	20	77	9	98	15	20	17	46	1.84
38008--38078	33	2.2	33	92	0	115	49	16	22	11	1.78
38458--38650	20	9.6	20	83	5	228	19	19	26	35	1.95
38644--38693	21	2.4	20	80	9	55	26	18	20	36	1.95
48345--48409	33	2.0	33	87	6	96	24	16	36	21	1.94
48563--48664	50	2.1	50	98	1	197	26	1	15	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49361--49385	2	12.5	2	100	0	50	52	0	0	48	1.00
50379--50436	28	2.0	29	81	15	68	63	3	13	18	1.43
53193--53484	43	6.8	43	85	1	325	26	13	23	36	1.92
53158--53443	129	2.2	129	79	5	333	28	14	23	33	1.94
53916--53967	21	2.5	22	73	17	56	0	28	21	50	1.49
54283--54326	23	2.0	22	83	16	56	54	4	13	27	1.58
56342--56412	36	2.0	36	97	0	133	30	9	16	42	1.81
58268--58451	82	2.2	83	80	2	219	38	18	17	25	1.92
58211--58468	41	6.2	40	77	8	198	33	18	20	27	1.96
59865--60015	41	3.7	41	83	2	162	33	18	11	35	1.88
59866--60043	41	4.3	41	82	4	128	34	19	12	34	1.89
61410--61497	31	2.8	31	84	0	122	53	7	9	29	1.61

Tables:   1

The End!