genome.fa.s315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000315.1 Hibiscus syriacus cultivar Beakdansim tig00000594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152795

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3671--3725	21	2.6	21	85	0	74	25	20	27	27	1.99
3762--3807	21	2.2	21	96	0	83	19	15	26	39	1.91
5230--5261	16	1.9	17	93	6	57	31	0	18	50	1.48
12133--12216	23	3.7	23	87	1	107	22	33	26	17	1.96
12145--12217	22	3.3	22	86	3	101	20	35	24	19	1.95
14412--14460	19	2.5	19	80	6	53	32	0	46	20	1.51
16265--16316	2	25.5	2	96	3	95	50	1	0	48	1.12
17039--17077	16	2.4	16	91	0	60	51	12	12	23	1.74
17961--18043	32	2.6	32	96	0	148	26	25	12	36	1.91
17961--18046	16	5.4	16	75	0	91	26	25	12	34	1.92
18419--18572	18	8.9	18	74	13	153	42	5	6	45	1.54
18427--18571	51	2.8	51	90	5	220	42	6	6	44	1.56
19813--19850	2	19.0	2	100	0	76	50	0	0	50	1.00
21097--21142	21	2.2	21	84	0	56	17	23	21	36	1.94
21813--21871	31	1.9	31	96	0	109	18	27	33	20	1.96
24638--24731	30	3.1	30	89	3	127	31	27	20	20	1.97
24719--24819	31	3.2	31	80	8	132	33	18	18	28	1.95
25594--25620	2	13.5	2	100	0	54	48	0	0	51	1.00
25653--25708	29	1.9	29	82	7	69	44	23	1	30	1.63
26095--26139	21	2.1	21	87	0	63	15	24	28	31	1.96
42075--42148	22	3.4	22	84	3	105	18	22	18	39	1.93
43419--43708	18	16.8	18	71	13	157	43	6	3	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43500--43703	2	104.5	2	65	25	73	44	5	2	47	1.40
43419--43631	51	4.1	51	79	8	218	43	7	3	46	1.47
43464--43700	69	3.4	69	86	2	314	43	5	2	47	1.42
43603--43698	28	3.5	28	79	16	121	44	5	2	47	1.37
45783--45882	52	1.9	52	93	0	173	36	12	14	38	1.83
46306--46464	32	5.1	31	83	6	162	33	22	18	25	1.96
49131--49217	24	3.7	23	84	4	120	37	19	16	26	1.92
51719--51759	18	2.3	18	100	0	82	9	21	51	17	1.74
51713--51778	31	2.1	31	94	0	114	15	21	46	16	1.83
51713--51742	13	2.3	13	100	0	60	13	23	46	16	1.82
51737--51772	13	2.8	13	91	0	54	16	19	47	16	1.83
55276--55346	30	2.3	31	87	4	99	29	23	18	28	1.98
55222--55485	132	2.0	132	97	0	501	31	20	18	28	1.97
55407--55527	30	3.9	30	84	6	152	33	21	19	26	1.97
57923--57947	12	2.1	12	100	0	50	44	8	16	32	1.76
62616--62680	2	32.5	2	100	0	130	49	0	0	50	1.00
76037--76090	23	2.2	24	78	18	58	50	0	0	50	1.00
76045--76108	22	2.9	23	84	6	71	48	0	0	51	1.00
76139--76193	26	2.1	26	96	0	101	38	0	0	61	0.96
76127--76195	26	2.5	28	83	9	81	42	0	1	56	1.08
76238--76317	8	9.6	8	76	14	56	48	0	1	50	1.08
76208--76298	27	3.4	27	75	15	82	48	0	2	49	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76276--76318	15	2.9	15	80	10	52	51	0	0	48	1.00
76373--76448	33	2.5	29	76	17	82	48	2	0	48	1.15
76426--76490	17	3.7	17	76	14	53	56	0	0	43	0.99
76448--76490	20	2.2	20	87	8	61	60	0	0	39	0.97
86215--86276	32	1.9	32	84	12	83	25	0	11	62	1.28
86257--86376	64	1.9	63	89	5	188	29	0	15	55	1.46
89869--89930	14	4.2	14	73	15	54	20	8	0	70	1.12
92588--92689	34	2.8	37	82	8	138	31	14	12	41	1.84
93439--94636	106	11.3	106	94	0	2067	22	18	25	33	1.96
95233--95316	37	2.3	37	83	2	98	42	15	16	25	1.87
95463--95539	36	2.1	38	92	4	131	36	15	23	24	1.94
96026--96061	18	2.0	18	88	0	54	41	30	8	19	1.81
100448--100753	149	2.1	149	96	0	567	34	20	16	28	1.94
102134--102292	63	2.5	63	86	0	201	26	22	19	32	1.97
102260--102297	19	2.0	20	94	5	69	26	28	15	28	1.96
105274--105375	34	2.8	37	82	8	129	31	13	13	41	1.84
105457--105604	76	2.0	76	82	9	187	30	1	11	56	1.43
107542--107700	63	2.5	63	85	2	194	28	20	19	31	1.97
112810--112847	2	19.0	2	100	0	76	50	0	0	50	1.00
116971--152788	7	5233.6	7	90	7	42642	2	10	45	41	1.53

Tables:   1

The End!