genome.fa.s3153.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003153.1 Hibiscus syriacus cultivar Beakdansim tig00006628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80959

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3245--3733	253	1.9	254	87	5	713	28	13	17	40	1.88
4126--4164	17	2.3	17	90	0	60	28	20	7	43	1.79
8973--9028	29	1.9	29	85	0	76	14	35	26	23	1.93
9039--9103	23	2.8	23	95	0	112	10	41	26	21	1.86
9067--9174	33	3.2	33	75	7	92	12	32	31	24	1.91
19567--19591	12	2.1	12	100	0	50	44	0	8	48	1.32
25088--25189	43	2.4	43	83	9	120	33	12	25	28	1.93
27679--27723	20	2.1	21	84	8	56	42	11	11	35	1.76
27972--28026	27	2.0	27	96	0	101	52	1	12	32	1.50
28181--28256	32	2.3	33	88	4	118	18	23	6	51	1.69
29723--29763	3	13.7	3	100	0	82	34	0	0	65	0.93
30224--30580	179	2.0	181	91	4	589	42	2	8	45	1.49
31326--31371	23	2.0	24	86	4	67	63	2	0	34	1.07
31360--31415	28	2.0	29	85	3	78	57	3	1	37	1.27
32383--32427	22	2.0	22	95	0	81	42	2	20	35	1.64
43654--43693	16	2.5	16	91	0	62	25	25	0	50	1.50
43663--43701	16	2.4	16	95	0	69	23	28	0	48	1.51
44025--44158	66	2.0	66	100	0	268	36	14	15	32	1.89
54456--54489	13	2.5	13	90	4	50	26	23	17	32	1.97
56913--57005	31	2.9	32	72	3	107	44	17	8	30	1.78
63687--63713	2	13.5	2	100	0	54	48	0	0	51	1.00
65393--65901	112	4.6	111	89	3	745	47	12	14	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66460--66498	20	2.0	20	89	0	60	41	7	15	35	1.76
66465--66504	20	2.0	20	85	0	53	47	7	15	30	1.72
66729--66774	23	2.0	23	91	0	74	36	19	8	34	1.83
67247--67281	18	1.9	18	94	0	61	42	2	14	40	1.60
75935--75973	11	3.9	11	75	25	50	46	0	0	53	1.00
76166--76290	51	2.5	51	86	1	171	16	34	31	18	1.93
77710--77922	110	1.9	111	94	0	374	45	10	7	37	1.67
77984--78037	16	3.4	16	69	23	51	59	1	5	33	1.31
78184--78307	51	2.5	50	90	1	185	17	31	35	15	1.91
79974--80359	194	2.0	192	94	3	677	33	18	17	30	1.95

Tables:   1

The End!