genome.fa.s3154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003154.1 Hibiscus syriacus cultivar Beakdansim tig00006634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65657

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5182--5459	71	3.9	71	88	1	407	42	20	10	26	1.85
5182--5459	141	2.0	142	88	3	418	42	20	10	26	1.85
9219--10405	265	4.5	265	87	1	1555	35	11	14	38	1.83
12838--12897	21	3.2	21	65	30	62	31	5	20	43	1.73
12830--12949	35	3.3	36	87	6	172	32	5	19	43	1.72
12803--12946	72	2.1	69	84	7	184	33	6	18	41	1.76
13359--13391	16	2.1	16	94	0	57	33	6	27	33	1.81
17455--17515	21	3.2	21	63	29	55	32	4	19	42	1.73
17447--17565	35	3.3	36	90	5	179	32	5	18	43	1.72
32804--32865	27	2.3	27	100	0	124	22	27	22	27	1.99
36789--36832	2	21.5	2	86	13	63	47	4	0	47	1.22
38399--38541	54	2.6	55	86	4	175	17	32	27	21	1.96
43419--43450	3	10.7	3	100	0	64	68	0	31	0	0.90
44492--44521	3	10.0	3	100	0	60	0	33	0	66	0.92
56062--56150	28	3.1	28	76	16	92	52	1	3	42	1.25
56111--56186	24	3.2	24	83	10	77	52	0	3	43	1.19
56127--56199	24	3.0	25	82	8	87	50	1	4	43	1.29
56114--56199	26	3.3	26	71	18	63	51	1	3	44	1.26
57732--57757	13	2.0	13	100	0	52	46	0	7	46	1.31
62898--62951	10	5.0	10	75	16	54	11	9	18	61	1.55
62911--62975	14	4.9	14	76	14	66	10	9	20	60	1.57
62901--62968	24	2.8	24	90	0	109	10	10	20	58	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63177--63262	24	3.6	24	75	19	81	12	12	16	58	1.64
65451--65499	25	2.0	25	100	0	98	48	8	4	38	1.52

Tables:   1

The End!