genome.fa.s3155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003155.1 Hibiscus syriacus cultivar Beakdansim tig00006635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74685

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844--960	35	3.2	36	87	6	166	43	18	5	32	1.72
893--952	21	3.2	21	65	30	62	43	20	5	31	1.73
842--987	72	2.1	68	84	7	186	41	19	6	32	1.76
859--988	35	3.7	36	84	9	153	41	17	6	33	1.76
3383--4546	265	4.4	265	87	1	1574	38	14	11	35	1.83
3383--4546	529	2.2	524	87	2	1672	38	14	11	35	1.83
8346--8625	71	3.9	71	89	1	418	26	10	20	42	1.84
8346--8625	143	2.0	142	88	2	418	26	10	20	42	1.84
11966--12025	21	2.9	22	82	9	72	66	0	1	31	1.01
15059--15118	21	2.9	21	94	0	102	21	20	26	31	1.98
15290--15315	2	13.0	2	100	0	52	50	0	0	50	1.00
21542--21579	20	1.9	20	94	0	67	28	21	23	26	1.99
22157--22630	258	1.9	244	90	9	758	46	6	19	27	1.73
22589--22664	34	2.2	35	97	2	145	50	2	25	22	1.62
22949--23055	28	3.6	30	86	7	157	22	17	23	36	1.95
26428--26549	64	1.9	63	81	1	145	35	18	20	25	1.95
26557--26614	20	2.7	20	86	10	71	29	22	22	25	1.99
27352--27386	2	17.5	2	87	0	52	48	2	0	48	1.16
27662--27739	31	2.5	30	79	6	84	28	19	21	30	1.97
27724--27762	20	2.0	20	94	0	69	25	23	25	25	2.00
27748--27814	30	2.2	30	100	0	134	23	17	25	32	1.97
27695--27792	50	1.9	51	83	2	126	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29025--29076	21	2.5	21	81	3	61	38	19	25	17	1.93
29065--29178	20	5.7	20	83	6	113	31	25	18	24	1.97
29062--29178	61	1.9	61	85	0	162	33	24	17	23	1.97
29694--29774	19	4.5	19	73	16	73	46	24	17	11	1.80
29770--29935	20	9.1	19	74	16	136	12	22	22	43	1.86
29775--29851	39	2.0	39	87	5	111	9	19	25	45	1.80
29823--29910	33	2.6	33	92	1	140	11	25	25	38	1.89
32850--32887	20	1.9	20	88	0	58	50	21	15	13	1.78
33149--33192	22	2.0	22	100	0	88	18	13	45	22	1.84
33380--33473	20	4.7	20	80	2	89	23	18	24	34	1.96
33360--33474	20	5.7	20	78	5	88	23	17	23	35	1.95
33463--33555	20	4.5	21	75	4	91	18	22	18	40	1.91
33402--33536	41	3.3	40	81	6	137	20	20	20	39	1.93
33463--33555	41	2.3	41	96	0	168	18	22	18	40	1.91
34226--34269	2	22.0	2	100	0	88	50	0	0	50	1.00
35801--35831	15	2.1	15	93	0	53	45	0	0	54	0.99
36066--36100	10	3.5	10	92	0	52	62	20	17	0	1.32
36034--36577	269	2.0	271	95	0	975	42	19	15	22	1.89
36637--36664	14	2.0	14	100	0	56	42	0	7	50	1.30
39038--39065	14	2.0	14	100	0	56	42	0	7	50	1.30
61796--61828	3	11.0	3	100	0	66	66	0	0	33	0.92

Tables:   1

The End!