genome.fa.s3156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003156.1 Hibiscus syriacus cultivar Beakdansim tig00006637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119623

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10124--10172	26	1.9	25	91	4	80	38	12	10	38	1.77
13154--13248	2	49.0	2	69	21	51	50	3	3	43	1.34
25431--25482	26	2.0	26	100	0	104	42	26	3	26	1.73
27671--29649	3	669.3	3	95	4	3598	33	0	0	66	0.95
39694--39727	16	2.1	16	94	0	59	41	26	14	17	1.88
41201--41235	14	2.6	14	90	4	54	45	28	0	25	1.54
41240--41273	7	4.9	7	88	0	50	20	0	35	44	1.52
42684--42715	2	16.0	2	100	0	64	50	0	0	50	1.00
43548--43590	18	2.4	17	82	17	52	41	0	11	46	1.40
44491--44536	18	2.7	17	80	6	58	39	8	21	30	1.84
45129--45191	28	2.3	28	94	2	110	42	33	9	14	1.78
55328--55671	120	2.9	120	94	0	607	46	7	13	32	1.70
57634--57688	27	2.1	26	83	6	67	63	21	7	7	1.44
63238--63274	19	1.9	19	88	0	56	32	27	16	24	1.96
63379--63441	19	3.2	19	71	8	63	25	19	22	33	1.97
63850--63939	19	4.4	19	76	16	90	31	25	5	37	1.79
63849--63941	44	2.2	41	81	9	109	33	24	5	36	1.78
63885--63947	20	3.1	20	76	17	67	36	26	6	30	1.81
69481--69517	2	18.5	2	94	0	65	51	2	0	45	1.15
71721--71861	29	4.9	29	93	1	212	41	10	12	36	1.77
72620--73152	273	2.0	273	90	0	834	46	18	14	20	1.84
73541--73656	21	5.6	21	69	10	60	32	27	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73644--73836	20	9.6	20	83	5	237	34	26	19	19	1.95
74216--74286	33	2.2	33	94	0	124	11	23	16	47	1.79
74366--74472	21	5.6	20	73	17	102	46	18	21	13	1.83
74427--74483	14	3.7	14	75	20	60	43	22	24	8	1.81
74420--74499	33	2.4	33	95	0	142	47	22	21	8	1.78
74495--74622	19	7.1	19	71	19	87	10	25	18	45	1.82
74517--74573	14	3.7	14	75	20	60	8	24	22	43	1.81
74500--74622	33	3.5	33	88	10	165	10	24	18	46	1.81
74558--74622	21	3.1	21	82	4	96	10	26	15	47	1.78
76573--76608	14	2.6	14	95	0	63	33	0	22	44	1.53
76715--76793	19	4.4	19	80	16	105	45	17	22	13	1.84
76733--76811	34	2.4	34	97	2	151	43	18	25	12	1.86
76802--77010	19	11.7	19	80	16	259	14	22	17	45	1.85
76879--77024	33	4.2	33	81	13	195	13	21	18	46	1.83
76808--77024	105	2.1	103	88	10	316	13	22	17	46	1.84
79307--79331	12	2.1	12	100	0	50	0	28	0	72	0.86
80245--80413	20	8.4	20	84	2	187	18	18	26	36	1.94
80381--80478	21	4.8	20	75	10	81	21	19	21	37	1.94
80381--80479	42	2.4	43	77	11	100	21	19	22	37	1.94
83571--83683	60	1.9	60	83	3	147	37	14	14	34	1.86
90944--90979	14	2.6	14	100	0	72	55	16	13	13	1.69
97011--97048	2	19.0	2	94	0	67	0	47	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101916--101955	20	2.0	20	90	0	62	25	20	7	47	1.75
102659--102963	123	2.5	122	90	1	484	28	17	9	44	1.79
104251--104312	31	2.0	31	87	0	88	40	20	4	33	1.74
104263--104323	31	2.0	31	83	0	77	45	18	3	32	1.65
105972--106251	50	5.6	50	85	4	359	23	12	15	48	1.78
105975--106251	149	1.8	149	86	5	396	22	12	15	49	1.78
106973--107009	16	2.3	16	90	0	56	54	0	2	43	1.14
107558--107629	21	3.4	21	86	0	99	29	30	18	22	1.97
117696--117775	36	2.2	38	93	4	137	36	17	10	36	1.83

Tables:   1

The End!